Array 1 16294-17819 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBZ02000025.1 Salmonella enterica subsp. enterica serovar Hartford strain CFSAN051032 CFSAN051032_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 16294 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 16355 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 16417 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 16478 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 16539 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 16600 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 16661 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 16722 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 16783 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 16844 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 16905 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 16966 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 17027 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 17088 29 100.0 63 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 17180 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 17241 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 17302 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 17363 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 17424 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 17485 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 17546 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 17607 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 17668 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 17729 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17790 29 89.7 0 A...........TC............... | A [17816] ========== ====== ====== ====== ============================= =============================================================== ================== 25 29 98.2 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 261058-261817 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBZ02000006.1 Salmonella enterica subsp. enterica serovar Hartford strain CFSAN051032 CFSAN051032_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261058 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 261119 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 261180 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 261241 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 261302 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 261363 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 261424 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 261485 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 261546 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 261607 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 261668 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 261729 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 261790 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //