Array 1 755081-755611 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018558.1 Hydrogenophilus thermoluteolus strain TH-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 755081 36 100.0 35 .................................... CCGCTCTCCAGGGCGAAGGTAATACTGCGTCTCTG 755152 36 100.0 35 .................................... ACAAGGACGGGAAGAAACTGGTGCGCTTGTTCTGC 755223 36 100.0 36 .................................... GGTTCCATCCTCACTCAAACCACCGATACGCGCAGT 755295 36 100.0 33 .................................... GTCAATCCCTTTCCATTCCTCATGTTTTTCCAT 755364 36 100.0 36 .................................... GGCCGTTGCCTTGCGGATGACGTCCACAGATGCAGG 755436 36 100.0 35 .................................... AGCGCGCTAACGGGAATTATCACGCAAACCTCGTG 755507 36 100.0 33 .................................... GCGATTCGACAAAGCATGTGCGTGCGTTTTCAA 755576 36 88.9 0 ................A................TTT | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 98.6 35 GTTGGAATCATGCCCTGATTGAGAAGGGATTAAGAC # Left flank : GGGAGGCATTTGCTTCAGCAAGCGACAGTTCGGTAGCTTCAGACCCGCTCGAGTGAGTGGTTCACGATGGCAACTTTTCTGATCTGCTACGATATCACGGACCCCAAGCGGCTGGCACGGACGCACCGCTATTTCACACGCGTGGCTACCCCCATCCAGTACTCCGTCTTTATTTACCAAGGCGATGAACGGAGTTTGCGTAGAATCATGGAACGCGCCGTTTGCCTGATCAACCCCAAAAAAGATGATCTGCGGTGCTACCCATTACCCGCGGGAGGATGGCGTAAGCGAATCGGTCGGGCCGTGTTGCCGGAAGGGATCCATCTCAGTGTACTGCCACCAGATCTCTGAAGTACAATTAATTTTGTTTGCTCCTTGACAATTTGGTTTATCCAATGTCGCACAACCAACTGTACAAAACACACGTAGTCAAAGTGGTTAATTTTTTGGGAACAGTGGTTGTAACCCATTGTTCCAAAAAGCAGAAAAATGTGGATGCT # Right flank : TGATTGTGTCAAAAAAACGCTATACTTTTTTTTCCGATTTGATTTCTGAAGGGACATTCCGATGACCCTCGCCGGCGAACTCGAATCCTACCTCACCCGGATTGCCAAGGTGCTGGGACACGCCGATCGTCATGCGGGGTTCAAGGACTACTGCCGCGGGCTCCTTTTGCCGATTGCGCGCAAAAGCATCGAACCGATTGCCGCGCAGATCGACCCCGAGCGGGTTCAAGCCAAGCATCAGGCGCTACACCACTTCGTGGCGAAATCTCCGTGGTCGGACGAAGCGGTATTGCGCAAAGTGCGCGAAATCGTCTCTCCGTACCTGCACTTGATGAGGCGTGCTACTGGATCGTCGATGAGACTGGGATCCCCAAACAGGGTCGCCACTCGGTGGGCGTTGCCCGGCAATACTGCGGGCAAGTGGGCAAGACCGAGAACTGCCAGGTTGCCGTGTCGCTCTCTGTGGCAAGCGAGAAAGGAAGCCTACCGATTGCTTTTCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAATCATGCCCTGATTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 63216-63454 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018559.1 Hydrogenophilus thermoluteolus strain TH-1 plasmid pTH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 63216 36 97.2 31 ..G................................. TTTGTTCGCATCGCATGGGTCGGGCGTATGG 63283 36 100.0 31 .................................... CCAGAAATGGAGGGGGCACTGTTTTTCGTGT 63350 36 100.0 33 .................................... CATTGGCCGAATTCCGAACTTTGTGCCGCTACA 63419 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 4 36 99.3 32 GTCACAAGCCCAACCGGTTGGGATAACAGTGTCGAC # Left flank : AAAGGGTTTTTACCTCGGCGAGCTGCAAACCTTGCAGCGGCAGCTCACCAAACGCTTCGGGCCGCTTCCGGAATCGGTGCAGGTGCGCCTGAGCACCGCAAGCCGCGAGGAGATCGAGCGCTGGCTCGATCGGGTGCTCGACGCGCACACGCTCGACGAGGTCTTTTCCGAGTAGCACGAACGCCTCCCGATCTCGGGCCTGCGCACGCTCCCGGTCATCGGCAATATCATAGGCGCAAATCACGGTATGGGTCATCGCGTAACCAGACGTTTCCGCCTTCCCCACCCATACAACGACAAAATGCCCACGCTGCTTCATCGCAAGCCGTCGCTGCACCCATCACAGCATCCTTCCATCCCCATCGCGCTCAAGGCCTGACGCTGCAGCTTTCCGGTACGGAAATGGGGATCTACCGAAACAAAGAAAAGCAGGTTTCTGTAAAAAAGCAAAAAATGCAGCCGACCAGCGCGCCGGTCGGCTGCAGCACTCCATGAACACG # Right flank : CTCTACCCTTTCAGATCCCTTGTGGCGCAAGGCTTTCCGCCCCATTCCATTCGGGACCTCCTCAATTTTGGCACGAAAGCGGCCCGTTTCACAAGAGGTCCCGAATTTTGTCAAAAATAGTAGGTTTTTTCTACCCATTCGCGCACCTGGTCGTGTTCGATCGCTTGGCGCAATGACGCCACGACGCTACGTATCTCTTGCTCCAGCGGGCGTTCGCCGCCCCGCACCATTTTGTCGAACGCCAACAGAAACGTCCGTCGCGCGTCAGGAGAGAGCCGCCACGACGCCGCATCGGGCAAAAAGTCGGCTTCGTCGATCTGTCTTCGTCCCCAAAGCGCCAGAATCAGCCGGTCGACTGCCGCCCGGAACGGTTCTACCACGTCGAACACCAGCGACGGATAGCGTCCAGCACTGCTGTGCAGCGCGCCCAGATACGGATCGAGCCCCTCCACCCGCACCCATCGCTCCACGACCGGAATGAGCAGCGTGTAGCCGAAATT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAGCCCAACCGGTTGGGATAACAGTGTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //