Array 1 13819-14623 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALCA01000104.1 Actinomyces sp. ICM47 ctg120010148426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 13819 36 100.0 28 .................................... ATGCGGCGCTGTGGGGTGTCGCCGTCGA 13883 36 100.0 28 .................................... AACGAGCCGCCGACCTTCTGGAAGCCGA 13947 36 100.0 28 .................................... TAGCAACGCTGACCTTGGGCGCGGTCAG 14011 36 100.0 28 .................................... ACGGGTGGTATGTCTTCCCGGACAAGTT 14075 36 100.0 29 .................................... ACCAGCGGCTGGACGCGCTGGAGGCCTCG 14140 36 100.0 28 .................................... GTCACGCGACACACCATGTCGGGTAGTG 14204 36 100.0 28 .................................... ACTGATACGCTCGTCCGGGGACATGTCC 14268 36 100.0 28 .................................... GAGCTGCGCCCTGCGTACAAGACGGCGT 14332 36 100.0 28 .................................... GTAACTCCCTTAATGCGAGTATCGTCGG 14396 36 97.2 28 T................................... AGGACGGACCAAACTGATCTGATTGAAC 14460 36 100.0 28 .................................... CCTCGCACAAATTGGTGATGACAAGCCG 14524 36 100.0 28 .................................... TCGACCGCGAGCGCCTTGACGATGAGGT 14588 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 13 36 99.8 28 CAGTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Left flank : GATGGCCATGGGATTCCAGCTGTCGCCGAGGCGCTGGCTCAGTCTTTTGGGCGCTATATCGAAGGGGATATTGATCGCCTTCAGGTGGCGTCGTGGCAGGGGCCATCGCGGGTTGGCGTGGGTGACTGAGATGGCGGATGACGCGATGTGGTGCTTGGTGATGTTTGATCTCCCGGTGGAGACGAAGAAACAGCGTCGTGAGGCGACGCGTTTCCGGAATGATCTGCTGGATTGGGGGTTCTGTATGGTTCAGTTCAGCGTGTACGTGAAGTACTGGCCGACGGGTGGGCAGGACCATGCAACGCTGAGGGCGATCAAGACGCACCTACCTGAGGGCGGGCAGGTGCGGGTGCTCGCTCTGACGGATCGACAGTGGGCGACGGGGCTTCGTTTTGATAATGCGAAGCCTCGGAAGGAGGCTGGAGCACCCGAACAGCTCATGATTTTCTAACCAAAAATCCCGAATTTTCGGCTATTTTCTGCCGAAAATTCGGGGTTCT # Right flank : CGCGAGCGGTCAAGTGGTTGCGTCGGCGCCAGTATATCAAAGGGGGGCAGTGTCATAGGGTGTAAGCAATTTTCGTGTAGCGGTGATGCTGTTCGGAGGCTGATCATGGGGTGTCGTCGGATGCTGAGTGTTGAGGATCGCGCGGCGATCATGGCGGGGTTGGAGGCGGGCTTGTCCCAGACGCGTATCGCCCACTTGATTGGGCGTAGCCCCTCGGTGGTGTGCCGTGAAATCGCCCGCCATCGGGGTCCTGGCGGCGTGTACCAGGCCGAGGATGCCGGGAGAGCAGCGCAGGTGGCCAGGCGCCGCCCTAAGAAGCGGCTCCTGGACCGCGATGAGATTCTCCGCCGCCGCGTGATCTTTGATTTGTCGCAGGGGCGCACGCCCCGCCAGATCAGCGGACGCCTGAGCGTGGAGGCATGTGGCACAGTGGCTCCTATGGATAATTCTCCCCACGCCCAGGGCCGCACGATCAGCCACGAGGCGATCTACACGTGGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 12357-12207 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALCA01000128.1 Actinomyces sp. ICM47 ctg120010148361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12356 28 100.0 33 ............................ TGAATGCCGTTCAGGCACCTGTCAGCCAGCGCC 12295 28 100.0 33 ............................ AAGTTCATTTCAGTTCCCTCCAGTTACTTGAGG 12234 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 CCGTGCCCCCGGCGCGTAGGGACAGCCC # Left flank : GTGTCGACGCGAGTCACCGACTACGATCTGCTACGACTGCCCGGACTCGAGTTCATCCGCAACATCGAGCTGTTCCTCCCCACCCACACGCTGCCCACGAAGTCCACGTGGTTCACCCTGACCCCCACGGCGCTGGCCGCGATGGGGATCGAGGCCGCGGACCTGGCGGGCACCCTGCACGCGACCGAGCACGCGATGATCGGCATCCTGCCCCTCGTCGCGACCTGCGACCGCTGGGACCTGGGCGGCCTGTCCACCGAGCTGCACGACGACACGGGCGCGCCCACCGTGTTCATTCACGACGCGTTCCGGGGCGGTGCCGGGCACGCGCTTGCCGGCTTTCACAGCGCGCGGTCATGGGTGGCCGCCACGCTCGAGGCCGTCTCCTCCTGCGACTGCGAGTCCGGGTGCCCGCGCTGCATCCAATCCCCCAAGTGCGGCAACGGCAACGAACCCCTGTCCAAGCAGGGCGCGATCACGCTGCTCACCTACCTTCAGGA # Right flank : TCTCCAACAGACGCATGCAATTCCCCCAGGCCAGTGTGAGTTGCTCTCACAAACGTTGCAATTCCGACGATCTGACTTCAATGTTTGCAAGAGATGCATAGGAATTACATGCGACTTTGTCGGGGAATTACGCCCACGATGCCTGGGTTATCTAGATTCACCTCATACGACAGTGCATTCACCAGAGCCCCGCGCGCGCTGATCGGAGGACTCCTCTCATCCGCACGCTAACCCGCTATTCCGAAGCTGGGCCCCTTCATCCGCACGCTAACCCGCTATTCCGAAGCTGGGCAGCCACGCCCACGTACGGGACAGGCGGCCCACATGCGGAACGGGGGTTCACATGCGGGATGCCTTGGAGTCCAAGTCGTTGGCGCACGCGGCCAATCCGTCACGAACCATGGGACAGCCACACACCCACGATGCTTCAGTATTCACATAATCGAGGCACACACGACCGACTAAAATAGTGAATTTCCCGCGCCGCAAAGCCGAAAAGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTGCCCCCGGCGCGTAGGGACAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 12709-13640 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALCA01000055.1 Actinomyces sp. ICM47 ctg120010148503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 12709 36 91.7 28 .TA.........A....................... TCTTCCAGTCCAACATGCAAGGCCACAT 12773 36 100.0 28 .................................... GTCTGCAGGTAATCGCCGACATTGATTT 12837 36 100.0 28 .................................... ATGCAGGCCGCTAAGGATGCCTGGCTGG 12901 36 100.0 28 .................................... CCCACGAGCGCAAACGGACACACGGCTG 12965 36 100.0 28 .................................... CGTCCACATAACCAGCCCTGGGGGTGTC 13029 36 100.0 28 .................................... TTGACAACCTCAAGCCGGGCCTGCCTCT 13093 36 100.0 28 .................................... GACAGCCTGGGAGATGTTGACAGCGACG 13157 36 100.0 28 .................................... TGGCCAACCGCTGCAATTGTCCCCGAGC 13221 36 100.0 28 .................................... GACACCGTGTACGCATCCCGCGAGCATA 13285 36 100.0 28 .................................... CACATCACACCGTGGTCGCTCGGCGGTA 13349 36 100.0 28 .................................... CGTTGATGAAGCAGAGGAAACCGCGCTT 13413 36 100.0 28 .................................... TGGCGCGCTTGTCGACGTGAACGAGGGT 13477 36 100.0 28 .................................... GCGCCGACGCAACCACTTGACCGCTCGC 13541 36 100.0 28 .................................... TGGCGCGCTTGTCGACGTGAACGAGGGT 13605 35 83.3 0 ....................-...GG..G.G..A.. | C [13637] ========== ====== ====== ====== ==================================== ============================ ================== 15 36 98.3 28 GCTGGGAATCAATCACCAATCCCCTTTGATATACTG # Left flank : ACGCAGGGAATACCCGTCGGCTACGGTGATCGCGTTCGAATCCCGGGGATCATCCCTGCTAACGCGGGGAACACCTGGCCCACGGGAAGAACAGTCTCAACGAGAGCGGATCATCCCTGCTTACGCGGGGAACACACCGTCTGATCTGTGCAAACATCACACAGCTCAGGCAGATTATGGGAGCGCAGTTGAACGCTTACCCCTAAACTACTCCTTCTATCGCACTCCTACAACCAAGGAAGCACAACTAGAAAGTCTAGTCAGACACAGATACGAGCGACCACAAGCACATCAGACATTCAACCAATGAAAGCAGCTTCCGCAGCGCTCAGAAAATTAGTTCCCAGGATACTAGTTCGTCGGATCATCCAGGTATTCGGATCCGTTCCACTCACTAAATTCACCGCTATCATCATAGTTATACTGCAGAATCGATCAGAACTACCGTTGTACTCTTCTAAGCATCCTCACTTTGGCACACCAATGCACAGCTCGCCATC # Right flank : GGTGGTAGCAATGAGTTGGTTGAATGCTTCTGTGGGGGTGCGGTAGCCGAGGGTGGCTCTGGGGCAGTTGTTCAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATCAATCACCAATCCCCTTTGATATACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1131-1536 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALCA01000006.1 Actinomyces sp. ICM47 ctg120010148474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1131 35 100.0 41 ................................... CGTCTACGACAACATCACGGATAGCGCACAGCGCTGGAAGT 1207 35 91.4 39 ........G....T...C................. TTGGACAACTGGCTGGCCACGAGCGGCGGGCGGTGGGGA 1281 35 94.3 38 .............T...C................. CGAGTGCTCCTACTGCGACGGCTCCCGCGCCTGCGAGT 1354 35 91.4 37 ...........G.T...C................. GGTAACCCATCTCGTCGAGGGGTGTTAGTTTAATCGT 1426 35 88.6 41 ...........G.T...C..............A.. CCTGTCGGACATTCATCTCTGCTACAAGTCTGGCAGGAGGT 1502 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 94.3 39 CTTAATGCACCTTATGGTGCTCGGTGCTTTCTGAC # Left flank : GTGTAGATCGCCTCGTGGCTGATCGTGCGGCCCTGGGCGTGGGGAGAATTATCCATAGGAGCCACTGTGCCACATGCCTCCACGCTCAGGCGTCCGCTGATCTGGCGGGGCGTGCGCCCCTGCGACAAATCAAAGATCACGCGGCGGCGGAGAATCTCATCGCGGTCCAGGAGCCGCTTCTTAGGGCGGCGCCTGGCCACCTGCGCTGCTCTCCCGGCATCCTCGGCCTGGTACACGCCGCCAGGACCCCGATGGCGGGCGATTTCACGGCACACCACCGAGGGGCTACGCCCAATCAAGTGGGCGATACGCGTCTGGGACAAGCCCGCCTCCAACCCCGCCATGATCGCCGCGCGATCCTCAACACTCAGCATCCGACGACACCCCATGATCAGCCTCCGAACAGCATCACCGCTACACGAAAATTGCTTACACCCTATGACACTGCCGTGCTTTCTGACAGGAAACCAGCGATTCCGTGCACAGCGCGGCGATGACGT # Right flank : CCTACAGCCTCACCCCCTCCATGCTCGACTGGCTCCTGTCTTAATGCACCTTATGGCGCTGATCTTGGAGGGTTGTTGGAAAATGTCGCACTCAATTCGCCTTCCACTCCTTTAAGACTTGAAGCTGTGCCGTTGAGATGTCGCGCTTTTCGCCGTTCGTTGAAGTTTGAACTAAGGGAATTGCGTGCGAAATTTTTGGGTGCTCGGTGCTTTCTGATCCTCTCCTGGCATGGTCGAGCGCGTCGATTCACTGTCCTAATGCAGCTTATGGCGCGCGGTGCTTTCTGACCACATACGCAACCCTTTATTATTGAGGTTGCATCGAAGTCTTAATGCACCGTTTGGTGCTCGGTGCTTTCTAACCGAGGGCGGTAAGGCCACCATTGAAGATCTCGGCAGCGGTATGTCTTAATGCACCGTTTGGTGCTCGGTGCTTTCTAACGAAGATCAAGCTCGTGTGGGTTGCGTTCATTTCCCTCATGTCTTAATGCACCGTTTGG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATGCACCTTATGGTGCTCGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //