Array 1 45-1475 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROM01000021.1 Cronobacter dublinensis strain cro1181W contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 ............................. CAATTGCTTAACGCCGAGGTGGAGCAGCAGGC 106 29 100.0 32 ............................. TTGACCAGCCGCACCATGCCCGCGCGGTGGTC 167 29 96.6 32 ........................G.... TTTCGTTTGCGTCGCCCGCGTGCGTCGGGACG 228 29 100.0 32 ............................. AAAGAGGCGTACAAGGAGGCGAAAAGCCTCGG 289 29 100.0 32 ............................. GCACGCTGACACATACCTAAAAAACGCCAAAT 350 29 100.0 32 ............................. CTTTACGGCTCCGACCAGCTCGCGGGCGACTA 411 29 100.0 32 ............................. ACCTGGTCAAACAAATGACTGACGCGCAATTG 472 29 100.0 32 ............................. TGCTCCCAAAGCGATTGCAGGCATTCGTGATA 533 29 96.6 32 ..........T.................. CGGCGGCGCTGGCCGCTACACCGGGCGAGTGG 594 29 96.6 32 ............................A CGCATCGCTGAACTGGAGGCGAGGACGGTTAA 655 29 100.0 32 ............................. CAACGCCCCGCCAGTGTAGGAGCACGGCAGGG 716 29 100.0 32 ............................. GATTTCCTGATAATCACACTCAAATAGCCTGG 777 29 100.0 32 ............................. GATGAGGCTGTCCGGACAGGAGGTCGGGCATT 838 29 100.0 32 ............................. GTCGGTAATCGGCAGCGACATAAAAAATATGT 899 29 100.0 32 ............................. AGTACACGCGAATCGTTCCAAAATGACACCGA 960 29 100.0 32 ............................. GTGGTGCCGCGTGAAAATACACTTCTACAGCC 1021 29 93.1 32 ...........AG................ GTTATCCAAAACCTTAACCACCCCCGACGCGT 1082 29 96.6 31 ............G................ CCGTTTTTCAGCTGGCCATAATATTATCGCC 1142 29 96.6 32 ............G................ GATGCCGGGATTACAATGGATGACGGCATGGA 1203 29 96.6 32 ............G................ TACAGTATTTACCGCATCGTTAGTGACGCGCC 1264 29 96.6 32 ............G................ ATTTCGCTGAAACAGTAACGGCGCTCTGACAG 1325 29 96.6 32 ............A................ CGCGAACAGATACCAAACGAGATGGGTTTGGG 1386 29 96.6 31 .C........................... CTCGGCATTACAGTCAAAAATCTGGAGAGCC 1446 29 75.9 0 ..A.....TC.A.C......A.......T | G [1468] ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGGGATAAACCGTCGCCGGTCGGGTCGTACGTGTCTTTGTCTTTG # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTGTGATTATTTTTTATAAATATGATAACGCTTCTTAAAATAGCTAACTTGTATTTTAGTTAATGGTTTTTAAAGCTTTATTACAATGTGTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAGATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGCGCGTGATCGTGCTTATAGCCAAAGCCATCATAAATGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGTAAGGCGTTGATAAAAGCAGGGTTTTATGAAGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGCTCCACGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201061-202553 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROM01000008.1 Cronobacter dublinensis strain cro1181W contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201061 29 100.0 32 ............................. TGTCCACGCATCCGCGCCCGCAAAAATAATCG 201122 29 100.0 32 ............................. TGCTTTAACTTCGCCGTTTTCCATTTCAATCA 201183 29 100.0 32 ............................. GGCGGGGGAGTTTAGTAACAATCCCATGCAAA 201244 29 100.0 32 ............................. TGTATCGCGTCATAAATACCCGAAATAGCAGC 201305 29 100.0 32 ............................. TCTTTCGCGTTACGCTTCGTGATGAGGATGAA 201366 29 100.0 32 ............................. GTCCTGCTCAGTGATATAGAAATTCCTCCGGA 201427 29 100.0 32 ............................. CGTATCCTCCTTTTGTTGCGTACGCAAGGAGA 201488 29 100.0 32 ............................. CTGGGAGGCTTTGTAGGCACGTTAATCGGTGT 201549 29 100.0 32 ............................. GGATGCCCCTGATTACTGGACAGGTGAGCAAG 201610 29 100.0 32 ............................. AACAATGTTGACTTCGAGAGGTTCCATCCATT 201671 29 100.0 32 ............................. GCGCTGCCAGCACCGTTCCGGGGCCAGCAGGG 201732 29 93.1 32 .G.G......................... GGCTTGGAAAACCAAAAGGCGCGGGCGCGAAA 201793 29 100.0 32 ............................. TAATGCGCGACAGCCAGACAAACTTTCTTCAA 201854 29 100.0 32 ............................. CCGGCACCGTCGCCCGCGTAGCGCGTCATGTC 201915 29 100.0 32 ............................. CCGTGCGCTGCTCGCCCTCAAATGCAATAGCC 201976 29 96.6 32 ............................C ATTAACCGCCTGTTAGTACCTGCGCCGCGTGA 202037 29 100.0 32 ............................. AGTAACTTATGGTCAACGGCCACCAGCGGCTT 202098 29 100.0 32 ............................. GGTTTGTGTTCACCGCTTAAGTTAATGATATT 202159 29 96.6 32 .................A........... CGTTATAGAGAGCGTGCAGCTCGATCCTCCCC 202220 29 96.6 32 .....................G....... TTAAGTTGTTGATTAAAAAGGCGCTAACCGGC 202281 29 100.0 32 ............................. ACCCAATTATTCGCGCTCGTTTTTCTGCTCTG 202342 29 100.0 32 ............................. GGCTTTTGGGTGGGGGTGGTGGCAGCGCGAGC 202403 29 100.0 32 ............................. TCGGCAAAAGTACAATTTGTGAAACGTTACTA 202464 29 100.0 32 ............................. ATATACGCCGATGCAGTGCCGGAAACCGACCC 202525 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACTATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGTCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGTAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228794-229005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROM01000008.1 Cronobacter dublinensis strain cro1181W contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228794 29 100.0 32 ............................. GCATTCTTCCATTGCAATAGTGCACTATCCGC 228855 29 100.0 32 ............................. CCCTGGGTCGTGAACTGGGAGCAGGAGCTTAA 228916 29 100.0 32 ............................. CGCCGCCTGGTCGCCGACCGGCCAGAGGTGGC 228977 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCTGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAATTCCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GCGGGCGCACTCGTCCAGGTCAGTGGGGATATGTGTTCCCCGACGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //