Array 1 159522-157906 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABP01000056.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4995_R1 NODE_2_length_409199_cov_1.30287_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159521 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 159460 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 159399 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 159338 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 159277 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 159216 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 159155 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 159094 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 159033 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 158972 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 158911 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 158850 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 158789 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 158728 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 158667 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 158606 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 158545 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 158484 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 158423 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 158362 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 158301 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 158240 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 158179 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 158118 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 158057 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 157996 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 157935 29 100.0 0 ............................. | A [157908] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177377-176191 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABP01000056.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4995_R1 NODE_2_length_409199_cov_1.30287_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177376 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 177315 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 177254 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 177193 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 177132 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 177071 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 177010 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 176949 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 176888 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 176827 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 176766 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 176705 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 176644 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 176583 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 176522 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 176461 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 176400 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 176339 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 176278 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 176218 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //