Array 1 25055-25864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHPO010000038.1 Escherichia coli strain sc17304042 NODE_38_length_34840_cov_21.166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25055 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 25115 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 25175 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 25235 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 25295 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 25355 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 25415 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 25475 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 25535 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 25595 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 25655 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 25715 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 25775 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 25835 28 85.7 0 ....................A...C.CT | T,C [25855,25859] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59-636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHPO010000395.1 Escherichia coli strain sc17304042 NODE_395_length_793_cov_16.6341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 120 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 181 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 242 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 303 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 364 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 425 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 486 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 547 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 608 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77-1124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHPO010000051.1 Escherichia coli strain sc17304042 NODE_51_length_29690_cov_22.8914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 137 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 197 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 257 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 317 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 377 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 437 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 497 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 557 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 617 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 677 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 737 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 797 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 857 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 917 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 977 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 1037 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 1097 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCAG # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22-723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHPO010000072.1 Escherichia coli strain sc17304042 NODE_72_length_21219_cov_31.2377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 22 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 83 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 144 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 205 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 266 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 327 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 388 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 449 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 512 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 573 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 634 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 695 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACAGTTATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //