Array 1 61991-63644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053844.1 Campylobacter geochelonis strain LMG 29375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 61991 37 100.0 34 ..................................... CGATATTTAGTTACTGATTGTGTTCTATAATCTA 62062 37 100.0 44 ..................................... CTTATTAGGTATCTCCCTGTAATCTATGGAAGGACCAGAGCCTT 62143 37 100.0 39 ..................................... AATTACTCTAGCTGTTGTAGGAAGCTCTTTTAATACCAT 62219 37 100.0 34 ..................................... TTTTAAATCTACAAATGTTAATTGCTAAGTTGGG 62290 37 100.0 40 ..................................... TTAGCATTTCCTTTTACTACAGCATCTCCAAAGACTTCAG 62367 37 100.0 41 ..................................... AAAAATAAAACTATGCGCATCGCTTATGTGAGTTATACTAC 62445 37 100.0 40 ..................................... TTAGCATTTCCTTTTACTACAGCATCTCCAAAGACTTCAG 62522 37 100.0 41 ..................................... AAAAATAAAACTATGCGCATCGCTTATGTGAGTTATACTAC 62600 37 100.0 37 ..................................... ACTCTTTCTAACTCTTTTTTAATATTCATTTTTTTTT 62674 37 100.0 44 ..................................... AGCATCTATACTATGGACTATGTTTACCGCTAGGCTTCTCCACT 62755 37 100.0 38 ..................................... GTTAAAAGGGAATTAACAGCCCCTACACCTGTTACCAC 62830 37 97.3 42 .......T............................. AAACTATTAAAGATATTTTTAAAATCTTTATTTTCAATCTTT 62909 37 100.0 44 ..................................... GCTTTCTGATGCCTTTTCGGCTTTTTGTTCCCTTCTAGAGTTGG 62990 37 100.0 36 ..................................... CTAATACTATTACTCTATTTCCTACTGTTCTTGTTT 63063 37 100.0 41 ..................................... TTTTTTATAACTAACGCCTTTTCTTGTTGTGTAGGTTTTTT 63141 37 100.0 40 ..................................... CCTTTGAGGTAGAAATGTTCATCCTCTTTTTTTTCATTTT 63218 37 100.0 45 ..................................... GCTTTGTTGGCGACTGCTGTCGCTACTTGTTGGTCTGACAATTCC 63300 37 100.0 40 ..................................... GCTTTATATGTATAGCCACCATTAACTTAGGTATGTTGAA 63377 37 100.0 43 ..................................... AAGATATAGTTATCTTAAGGAATTTGAAGGAGAAACCTTCAGG 63457 37 100.0 34 ..................................... TTACTAGCTTTGTAACAGTCAACTAAAATGGACT 63528 37 97.3 43 ...........................A......... TCAGTTATGACACCCCAGATGTGGTATTTACCACCCGAGTTTT 63608 37 94.6 0 ..................................G.T | ========== ====== ====== ====== ===================================== ============================================= ================== 22 37 99.5 40 GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Left flank : TAAACACGGTTTTTATTTTTGGTTCCGCCATGATTTCAATATATTTTAAGATATTTTTAACAAATTTATCACTTTAGAGTTTCTAACTTTTTATATTTTAAAACTCCCAAATTTAGAGCTTTTTGGTTTTTTGCTCTTTTAAAAAAGTTAGAAACTCAATAAATTTAGTATTTTTAAAAACACACTTTCTAATTTTTATAATTATTTAAATTTTAAAAGCCCATTTTTGCGGTATTTTAAAACTTAGATTTTTCTTAAATTTGGAAACTATACGCAGTTTAAAAATTTCCCCATTCGACTTTCTAAATTTTTAAATCTCAAAAACCACCATTTTACCGATACTTTAAGGACAAATTTAGCAAAACTATCGATTTATACATTTTAAAAATCAATAGAGTTTCGAATAAATTCGATCAAATTCAGCTCTCACAGGCTTTTGCTTAAAGAATTTATAATCATTAAAAAAGTATAATCATCTTGCAAATAACTAAATTTACAGT # Right flank : TAGAATTTGCATATAAGCAGTAGGTTTTATAAAAATTTAGCTTTAGCCAAATAAAAAAGAGGTATAATTAAATTTAAATTATAAAACTTGGAGAAGATATGGGCGAATTTTTTATGTCTGCTATAACTTATATGGACTATGTTACTATTATCTTTGCTTTTGCGACGATGTTTGCTGTTTTTTGGCAGTGGTATTTCAGAAGAAAAGACAATAACGAAATAACAATTTATATAGATAAAGATGGCGAAAAAAACGAGCTTCCTATCAAAATTTTGCGTAAAAATATCTCTCGCGCTGAGGTATTTGGCATTTTAGGGGCTTTGCATACTGGTCAACAATGGTCGATAAAATACACTTCAACAGTAGAATTTATGCAAGATATTTTACAAATTCAACTGTATAAAAAAGATTTTTTAGAGATAAAACTAACAAGCAATGACAACTTCCAAACAGATATCGACTACTTATAAAAACACCTTTTATAAAATCAAATTAAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 128914-130400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053844.1 Campylobacter geochelonis strain LMG 29375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 128914 36 100.0 30 .................................... TAAATATGACAATAAAAGGCATAAATATGG 128980 36 100.0 30 .................................... AGTGCCAAATCAACAGAAGCAGAATTAACG 129046 36 100.0 30 .................................... CAAAACCGAATTAGAAAAAGTAACAATACC 129112 36 100.0 29 .................................... TCTTTTTTACCTGCTGATTTTTCAACTGG 129177 36 100.0 30 .................................... ACAAAGCAGGTAATGTAGCAAGCAATCTTG 129243 36 100.0 29 .................................... TTAACCGCACTCATCAAAAAATCCAGACT 129308 36 100.0 30 .................................... CAGGTATGCGAACTGGAGAAATTTTAGCTT 129374 36 100.0 29 .................................... AAATCTTTAAAAATCTATGATTTTGTAGA 129439 36 100.0 30 .................................... TTATTTGACAAAATAGTGGGCAATGATAAT 129505 36 100.0 30 .................................... GGTTTGATGAGTTTGTAGCAAACACAGTAG 129571 36 100.0 29 .................................... TAGATAATCCTTGCCCCTGTCGCCTTTTA 129636 36 100.0 30 .................................... GCTCTTGATAATATCTTGGTGTATCCCTAT 129702 36 100.0 30 .................................... ATGTGTTATCAAATGGGCATTGCAAAGGTA 129768 36 100.0 30 .................................... AGATAAAAGTCTTAGTTCTTGTAACACATT 129834 36 100.0 29 .................................... TTGTATCAAACTCTTGACCGACAGGCTCT 129899 36 100.0 30 .................................... CAAGCTTAATTATTACAAACTATTTAACAG 129965 36 100.0 31 .................................... TATAGAAGCTGTAGCTAACCCGATAAGGACA 130032 36 100.0 30 .................................... TCCCACTCTCCATTTATGCTATTTTTACTA 130098 36 100.0 30 .................................... TCCCACTCTCCATTTATGCTATTTTTACTA 130164 36 100.0 31 .................................... TAAAGTATAGTTATTATGTGATTCCGCCAAA 130231 36 97.2 32 ...................................A ACTCCGAGCGTTAATCAAATAAAGGAAAGTTT 130299 36 100.0 30 .................................... AAGAGCTATACTAGATAAAGCAGATGCTGA 130365 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 99.9 30 GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Left flank : AAGAGATGGTTTTGAAGGATTTATATCAAGAAAGCCATGAAATTTTAATGGCTTTAAATCGATTTGCAAGTAAGATTGTAAGCAATGTTGACTTTCCTATAGGTTATGATGATATTGAGATCGAAGCGGTTTTAAAATCTTTAAATATTAAAATAATAAAAAGCGATAATTTGCTTGAGCAAATCTTAGATTTGATGATTTTAGAGCGCGATTTTTTACAAACTAAGCTTTTTGTATTTTTTGGATTAAAAACTTTTTTGACCAAAGATGAAGTGTTGCTTCTATACGATGAGATAATTTTGCGGCAATTTAATGTACTTTTAGTAGAGCCATTTTATCAAGAAAGATTAGAGTGTGAAAACATAGTTATCATAGATAAGGATTTTTGTGAGATTAGAAATTAAAATAGTTTTAGATTAATTTTATGTCAATATGGTTAAAATTAATAGTTTGCTATCATAATTTAAGTAGGGTTGTGTCTACTAAACTCTTGATTTGAG # Right flank : CAAACTCTTTATTTATGTGTGATGAAAAAAGGGTTCGAGAGTTATTTAATGCAAATATAAGTAATAAAATTTATTAACCATTTTGATATACAATCATCAAAAAGGATAAAAATGTTAAGAAAAATTGACCATTTAAATTTGGGTTCAAGCAACCTTGGTTGGCTACAAAGCAAGTTTCACTTCTCTTTTGCGCAGTATTATAACCCACAAAACATACATTTTGGCGTACTTCGCGTGATAAATGATGACACGATAGCCCCAAAAAGCGGATTTGGAACGCATCCGCACGAAGATATGGAAATCATAACTTATGTCATAAATGGCACTCTTACTCACAAAGACAGCATGGGAAACGAGCGCTCGCTCGGGCGAGGAGATGTGCAGTATCTAAGTGCTGGAGTTGGCATAACTCATAGTGAGTATAACAACTCAGATGAGGTTTTAAGACTGCTTCAAATTTGGATTTTCCCTGATAAAAAAGGGCATAAACCAAACTATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 700363-710708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053844.1 Campylobacter geochelonis strain LMG 29375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 700363 30 100.0 36 .............................. AGATGTGGCTCGAACGTTCTAAGATAAATCATATTG 700429 30 100.0 35 .............................. TTTATAAAAGCGTGTGCGTATCTGTTTTGTTGTGA 700494 30 100.0 35 .............................. GCTTGAGATTGTAAGGCGTTGTATCAAAGGCAATT 700559 30 100.0 37 .............................. GTTTGTTTTATTTCTAAATTTCCATATTTCATATGGG 700626 30 100.0 36 .............................. AGTTCTAATAATGTTGATATATTAATTAATGGCGAT 700692 30 100.0 36 .............................. ACCCTAACCATAAAAAATCCAAAAACGCTAAATTTG 700758 30 100.0 35 .............................. TCGCGAATAACTATTATTTCTTTTAAGTCGGTTTT 700823 30 100.0 37 .............................. ACCCTATTGTATTCCCATTCTTCAAAAGAAATTTTTT 700890 30 100.0 35 .............................. TCTGGTATTAGATTGTATTTTACTATCAAGAATGG 700955 30 100.0 35 .............................. AGTTTTATTTTTTCTTGTCCATTTTTTTTAATCTT 701020 30 100.0 35 .............................. TCCCCTATAGGGATTAAATCTAGATACTCGATTTG 701085 30 100.0 39 .............................. TTTAGTTTTGAAGTGATTAAAATTTCAACACTTTCTAAA 701154 30 100.0 37 .............................. TTGTGAACTTGAGCTGCAGCTAAGCTTCCAGAACTTA 701221 30 100.0 35 .............................. TTTAAATCCTTATAGCTACTGTTTCTGTAAAGTTG 701286 30 100.0 35 .............................. TCGCTTCGCAAAATAGGTGCTTTAAAGATAGATTT 701351 30 100.0 36 .............................. GCTAGATAGAGGGGTTAATTCTTCTCTTAGCCAAAA 701417 30 100.0 34 .............................. ACCATTGCAACAAGTTTATTAAAATCTGCATCTG 701481 30 100.0 35 .............................. AGAAATATAAGTGGCATGAGAGATATATTAAGAGG 701546 30 100.0 33 .............................. AGAATGATAGTACTGAAAAAGGTGGTATGGCAG 701609 30 100.0 37 .............................. TTGTTTACCTTTTTTACTAAATAGTTTTTTTCTTTTT 701676 30 100.0 35 .............................. AATGAGTAGTTATGTTTGTTTTTATACTCCGTTAG 701741 30 100.0 36 .............................. CTAATTTCAAGACTACTTAACTCTTCTAAACTTACT 701807 30 100.0 36 .............................. GCATTAGAGCGAAAGAATGAAACTATTTTAACAAAA 701873 30 100.0 35 .............................. TTAGGCGATATAAGTGACTTCCTAAACTACAATAC 701938 30 100.0 35 .............................. AGCAGACTAAGTGAACTAACAAGAACCTTAGGCAT 702003 30 100.0 36 .............................. TCTGCGCTCCTTATTAAAATTATTAAATTTACGCCT 702069 30 100.0 38 .............................. TACAAGTGCCACCCATACCTAAAAAAGTAATATTTTTC 702137 30 100.0 38 .............................. ACCGTTACCTCGCCGTTAATCTTCTCAACCCCAACCTT 702205 30 100.0 35 .............................. ATTTTAAGGAGGTAAAGGTGTCAAGTCCACAAAGA 702270 30 100.0 36 .............................. TCTTATATCCTTAATATGATTTTAAATTAACAAGTA 702336 30 100.0 38 .............................. GGTAGAGCTATAGTTCTATATACCCATTTAGAATAGGT 702404 30 100.0 35 .............................. ATAGCTATCGTTGTGTATATCGACTACCTTTTTAT 702469 30 100.0 36 .............................. GATGTTGCTTCTTTGATTGTGAGTTAATATGCTTAG 702535 30 100.0 36 .............................. AAATATTCTAAATAAACATCATTTAATTTCATATCT 702601 30 100.0 35 .............................. GGTTCAATTGAATTAACAAAGGCTGTAAGAAGTGT 702666 30 100.0 36 .............................. GCTAATTCGGCTTGTGTTAAGCCTTTTTCTTCTCTT 702732 30 100.0 36 .............................. AGCTACTAATATGCTTAAAAAGGCTAGTAGATGAAT 702798 30 100.0 35 .............................. AATAAGTGAAGCAGATTTAAAGACAGGTAGACTAG 702863 30 100.0 37 .............................. CTTTCTTCTTCGTATAAGTAAAACAAAAAGCCATCTT 702930 30 100.0 35 .............................. TTTTCAAACTGCACACAAAGCAGAGGCAAATGATA 702995 30 100.0 36 .............................. CTAAATTCCTCTCCATATGAAGCCGAAATATCTTTT 703061 30 100.0 37 .............................. ATATGTTCAAATCCACCCTTGCTAACCCCACTACTAC 703128 30 100.0 36 .............................. TAAATTGCTCCGATAATCCTGTAATATTACCGTTAG 703194 30 100.0 34 .............................. TTTGGAAGCTTAAAATTAAAAATAAAATAAAGAG 703258 30 100.0 36 .............................. TAGGGAGTTTCACCTTTTCTTTACGCGTTACATAGA 703324 30 100.0 36 .............................. TGGCATATCTATGCTGTATTGCTTGAGTTTTTTTAG 703390 30 100.0 35 .............................. AAATACAAGAATAAGAAAACTATAAGTAATGGCAT 703455 30 100.0 37 .............................. CTATATAAGTGGTTTTCTATTAGCACTTTTATTTTTT 703522 30 100.0 35 .............................. AGCTTATCGCGCTGCTCTTTACTTCTTACGTTTGT 703587 30 100.0 36 .............................. CAAGCTACTAGGGCTAAAGTCTCAAACTGTCTTAGG 703653 30 100.0 33 .............................. GCGCCTTCTTCTTCTATGTCTCTCCATATCCAA 703716 30 100.0 36 .............................. ATTAATTCAACTTGCGCAACTACTTCAACACTTTTA 703782 30 100.0 35 .............................. TGTATGTGAGCATTGTCTGCTCTATCTTTCATTAG 703847 30 100.0 35 .............................. AAAGGTAAATCTAAAATTATGCATGTAGTTAAAAA 703912 30 100.0 35 .............................. TTTTTACTCCTAATTATTAGCTTTAACTCTATACT 703977 30 100.0 37 .............................. TCTGTTTTAAGATAAATATTTACTACTCCAGCTCCTG 704044 30 100.0 37 .............................. AGTAGTTCTACTTCGACTTTTAAAAGCTCTTTAAAGG 704111 30 100.0 35 .............................. CTTAGATAATAAAATGCTACCTCATAAACAATATA 704176 30 100.0 37 .............................. TCTGTTTTAAGATAAATATTTACTACTCCAGCTCCTG 704243 30 100.0 37 .............................. AGTAGTTCTACTTCGACTTTTAAAAGCTCTTTAAAGG 704310 30 100.0 35 .............................. CTTAGATAATAAAATGCTACCTCATAAACAATATA 704375 30 100.0 35 .............................. TTGCTAAACTAGCTTTGCCAACTGCGTTTGAAAGA 704440 30 100.0 35 .............................. ATAAGTTAAATAATCTAGCTAAAAAAGAGGCATTA 704505 30 100.0 36 .............................. GTTTTTCTTTATAGTTTTGATGCTGTATTACTTGTT 704571 30 100.0 35 .............................. GCTAAAGCAAAATACATTCTATTTCCATCTAATTC 704636 30 100.0 35 .............................. GCCTTTTTATTTAGTTCAACTTTCATAATTTAATG 704701 30 100.0 38 .............................. ATTTATAACGCAAACAGTGAGTTAGATGAGATTTTAAA 704769 30 100.0 36 .............................. CTTAAATAGTTTATCTTGTCGCCAAGTTCGCTCATT 704835 30 100.0 36 .............................. ATATAACTTGCTCTGCTTCATTATCTTTTTTCATAG 704901 30 100.0 35 .............................. TGTATTCCACCTGTGTTTGCATACTTATCCCAATA 704966 30 100.0 35 .............................. AGCATTAGCCCAAATGGTGAGCATATGCTAAATGA 705031 30 100.0 35 .............................. GTCATTAAAAAGCTCCAAAATCGATAATAAAGATT 705096 30 100.0 36 .............................. CTTTTAAAAGCAGTGTTAAATCTCTTTGTAAATTTA 705162 30 100.0 35 .............................. AGCTTAGTAATATCGCCAAAGTTTCTATCATCTTT 705227 30 100.0 18 .............................. TATACTCTAACATTGTCA Deletion [705275] 705275 30 100.0 38 .............................. AATCCCATAGATAAGATATCATCACCAGAATGATTACT 705343 30 100.0 36 .............................. AGCGGTAAAGATGAAAACACAGGAAGAGAAACAAGT 705409 30 100.0 36 .............................. AAGCCTTGTAATAATTAACATAGTAGTAATAGTTAA 705475 30 100.0 36 .............................. AAAGGTAAAGCAATGGCTGTTGTTGGTCTTTTGACT 705541 30 100.0 36 .............................. TAGAGTATATAAAGTATCTCATACTAGCATTCCTTG 705607 30 100.0 36 .............................. AGCAAGAGTTAGACCTAATACAATAATTATAAAAGC 705673 30 100.0 36 .............................. ATCCCATCAAGGTGGGGAATCAAGTAGTTTTTATGT 705739 30 100.0 36 .............................. CTTTCTTCTTCGTATAAATAAAACAAGAAGCCATCT 705805 30 100.0 36 .............................. CGGTTTTGCTTAAACAATCTCACATTTATATCATCT 705871 30 100.0 36 .............................. TTTATTATTTCTAAGAATTGTTTTAATTCTTTTAAA 705937 30 100.0 37 .............................. ATGGTTTCTGGACTTAACAGCTCTAATTTTTTAGCCA 706004 30 100.0 35 .............................. AAGAAATTACCAAATGCGGGTATGATTGCAGCTGG 706069 30 100.0 35 .............................. CCATATCTGGCACAACCAGCAATAAAGATAGAAAG 706134 30 100.0 35 .............................. ATCCATTCGCCACTATTTATATCAACACCAGATGA 706199 30 100.0 35 .............................. AGTCTTAGTTTATTTAATATTCTTTCTAACATAGC 706264 30 96.7 37 .....A........................ AGCCTATCAAAACATCGATGATTTAAGAACAGCATTA 706331 30 100.0 35 .............................. GCCGGATACTCGCTTCTAATTACTTCTAAATATCC 706396 30 100.0 37 .............................. ACAGTTGTATAATCATCCTTATTTATATCAGAACTAG 706463 30 100.0 36 .............................. AAAGTTATACCAAGAGCATTAGTTATTTCTATGCTA 706529 30 100.0 37 .............................. ACAAAATAGAGTAGCTAAAACTCAAAATGAGACTTTA 706596 30 100.0 37 .............................. TTATTTTAAGCAATATATAAGTATACAGATAGTATAA 706663 30 100.0 34 .............................. TTTAAATTGTGTTTTTTATCAATTTTTGTAAAGT 706727 30 96.7 36 ............T................. CAAGTTATGAAACCATCTTTAAAAAGGTTTGTAACC 706793 30 100.0 37 .............................. TAAATACCCCTCAACAATACTGCTAAATACCAATAAC 706860 30 100.0 35 .............................. TCTTTAAAGTTAGTTACATCTAGCTTTTTAAGCTT 706925 30 100.0 36 .............................. CGCGCTGGCGGTCAATGTTTTTTAGCGCCCTGCCTG 706991 30 100.0 36 .............................. AGTGTAAAAGATTTTTTATAATCAACCTTGATGGTA 707057 30 100.0 36 .............................. TATTATGCTTATACGTTCTCATAGTTGCATATCTCT 707123 30 100.0 36 .............................. ATAAACTCATCTTTTAGCTCCCTATATACATCTCTT 707189 30 100.0 35 .............................. GATTTAAAGAATGTATGCAAGCTATTTGGAGTAGA 707254 30 100.0 36 .............................. ATGCTGCATTGAGAATAAAGCATATTTAAGAAGAGC 707320 30 100.0 36 .............................. TATCATATATGTAATATTTTTGTTCTTGTTCTGATA 707386 30 100.0 36 .............................. CTATTTTATGTCTCTTTGCGGAATACTTACAGGCTT 707452 30 100.0 35 .............................. TCATTACATACTCAAGCTTTTTATCGTTATTTGAG 707517 30 100.0 36 .............................. TAATAACCCAGTCGCCAGAACTTAGACATGGATACA 707583 30 100.0 36 .............................. ACTTATGTATGGATGTCGTATAGTTGCTATTGAGAC 707649 30 100.0 36 .............................. AAGAGATTATAGGAATTTTAAGTTTGTAGATAATGA 707715 30 100.0 35 .............................. CTTATAACAAGGCTAAAACACTCGCTAAGAGCTAC 707780 30 100.0 36 .............................. ACAAATAAATTTCGAAGCAATATTTATAGGAGGAGA 707846 30 100.0 36 .............................. ATTCTAAATACTAGTATATCTTCTTGAGTATCAATG 707912 30 100.0 37 .............................. TTCTTAGGTTTAAGCTTTCCATAACGTATATCATAAA 707979 30 100.0 36 .............................. AGCACATAACTTTTACTATCGCTTTTGCTAACTCCA 708045 30 100.0 35 .............................. AAGTACTAGATTTAACAACGAAATTTTAAAGGAAG 708110 30 100.0 36 .............................. TATTTCTGCATTGCCATATACTATAGAATTATCAAA 708176 30 100.0 36 .............................. AAGCTATGGTGTACTTTCTTCAAGTGATGTTTTTGC 708242 30 100.0 37 .............................. TGGTATGGAAATCCAAGCACTGCTTCTAAACACTCTA 708309 30 100.0 36 .............................. TTATCTTCTACTTCTATACCTTCAATATCTGAGCTA 708375 30 100.0 36 .............................. TTGCTAAAAAAATAGCAAACAAAGCCGTAATTGGCA 708441 30 100.0 36 .............................. AATAATATGTTTGAGCCGCCAGTATCCAACCCTATA 708507 30 100.0 36 .............................. TTTCGAGTTAATCCATCTTTAAAAGTGGATAAGAAA 708573 30 100.0 37 .............................. AACCAAAATTTTAAACCTTGCAGTTTTGGATAGATTA 708640 30 100.0 35 .............................. GTATAAATCCAAACTATAAGAGCAATAATAGAAGC 708705 30 100.0 35 .............................. TCTAGTTTGGTTGTTAATTTATCATATGGAGTATT 708770 30 100.0 36 .............................. AATAATATGTTTGAGCTAGATGAAGAAACGTATGAG 708836 30 100.0 36 .............................. GTTTTTCTTTATAGTTTTGGTGCTGTATTACTTGTT 708902 30 100.0 36 .............................. GAGTTTGGCATAATGTTAAGAACTGGTGGCTTGATA 708968 30 100.0 37 .............................. TAGGCTTAAAATTTCCAGTACTATATTCAACTCCTAG 709035 30 100.0 36 .............................. TCTGTTATTTGTTTGTAGCCCAAGAAGTCATTTTCT 709101 30 100.0 35 .............................. ACTCTATTTCATTGTCTAGTTTTTCACTTTCCACA 709166 30 100.0 36 .............................. TTTTAGTTACAACGAGATTATGGGGCTAGAAAAGGC 709232 30 100.0 35 .............................. TTGATAGCAATATTGAAGTTATAAACTCTTTTAGA 709297 30 100.0 36 .............................. TTTTTATGCAAAAATAGTGTAAAAAAGGACAGAAAG 709363 30 100.0 35 .............................. AGACTTGCATTTACATTAAATAACCTTAATGTTTT 709428 30 100.0 36 .............................. CGCTTTATATGCATAGCGAATATTAGTTTTGGTATG 709494 30 100.0 35 .............................. GTAGCAAAGCAAACAAGGTATAAAGAGCAAGTACT 709559 30 100.0 36 .............................. AGAAATTTCTCATTACTTTGAGTCTTTGTATAAGTT 709625 30 100.0 37 .............................. TCACAAATATATGGCTCCATGCTATCGCCTACAGCAC 709692 30 100.0 35 .............................. AAAAATCCATTATCTCTTTATAAGGCACTGAGTCT 709757 30 100.0 37 .............................. GTCAAAAAATCTGCCAAATAAATCCATCCAAAAGTCA 709824 30 100.0 36 .............................. GCTGGCATTTTATTAAAATTAGTCACAAAATCTTTT 709890 30 100.0 36 .............................. TAGTGTTTATAAACCAAATTATCCAGCCTATCGCCA 709956 30 100.0 35 .............................. ACAAACAGAAGATACCCTAATAATCTCTACTCTAT 710021 30 100.0 36 .............................. AACTTTATCAAATTTGGTTTGAGCAATTAGAGCCAA 710087 30 100.0 35 .............................. TAAATACAGGGTTTATACTCAATAGGTAATTCATT 710152 30 100.0 37 .............................. TTTTTCTATGTTCTGTCGGCTCTTTTGGGTATAGGAC 710219 30 100.0 35 .............................. TTCTTTATCATCTACCATTTTTCTATGTTCTGTCG 710284 30 100.0 35 .............................. AGAATAACCTTTATCTTTTACTATTTTCATAAAGT 710349 30 100.0 36 .............................. ATAATTAATGCTCCAATTCCAGTAGAAATTAATGCA 710415 30 100.0 36 .............................. TCAGCTAATCTAGCTAATGCCTCTTTTTTAGCTAGA 710481 30 100.0 37 .............................. AGAGAGCAAAGAAAAGGCTAAGGAGCAAGAGCTTCCC 710548 30 100.0 35 .............................. AACTTTACCACAAGCCCCACTACCAACACAACCTT 710613 30 100.0 36 .............................. GTATATGTTACAGCGGCTTTGATATAGTATCTATCG 710679 30 93.3 0 .....C..................C..... | ========== ====== ====== ====== ============================== ======================================= ================== 158 30 99.9 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : ACAAAGGTTTTTAAGGTGTGTAAGAAGTATTTTTTACATCATCAAAAATCAGTTTTTAAAGGCGAGATTACACCATCGAATTTTATAAAATTTAAAGCCGAAATAGAAAAAATAATAGATAAAAATATCGATTTTGTTAGCATAATACGACTTGTAAGACAAAGCGATGTGGATGAAATTAGCATAGGTGGAATGGCTTTTGATAAAAATGATATGTTTTTGTAACTTTTGTAATTTTATTCTTAATTTTGCTTAAAATTTCTTTTGTTTTATAATTTATTTTTATACTTTTTTAGTTAAATTTCAAAAAAAGATTGCTTAAGATTTTTCCAACTGAATTTTTGATAAAATATCTATAAAGGTCTATAATTCGAACCTTTGAGCTCTTTAACTTGTCATTGTTAAAAATTTAAATAAAGGCTGGAAAAATTATCATTATCTCTCCTAATTTTGGTAGTTTTATGGTATTTTGATGTTTTTAGGATATAATAATTATCGTT # Right flank : CGATATAAAAACCATAAAAACAAAAACACAAAACCAACCGCCACTTCGCAAAATCATCTTGTTAATATAACTTTAATCTTTTATCGCTAAAATTTACAATTATTTTTATTTAAGGAGATTTATGTATCTATTTACTTCTGAAGTTGTAAGTCCGGGTCACCCAGATAAATGCGCTGATATTATCGCTGATAGCATAGTTGATGCGGTTTTGATGGAGGATAAGGATGCTAGAGTGGCGAGTGAGGTCTTTGTCGCAGGCAAGCATATCGTCATTGGCGGCGAGGTAAAAACAAATGCAGAATTTAGTTTTAAAAGGTTTGAGGCCATCGTAAAAGAGGCTCTTAGACACATAGGATACAACGGAAACCCAAATTTTACAAAAGAGCAATGTTTGCATCCAGATGACATCGAAGTTCATGTGCTTTTAAACAAGCAAAGTTCAGATATCAACCAAGGCGTTGATCAAGATGATGGCGAGATAGGAGCAGGAGATCAAGGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1028407-1028049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053844.1 Campylobacter geochelonis strain LMG 29375 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1028406 30 90.0 35 C....................A...A.... GTCATGATTACATATGTTCCATCTTTATCTAAAAT 1028341 30 100.0 35 .............................. TATCTTTTAATAATCTCAAGAACTTTAGCCTTATC 1028276 30 100.0 36 .............................. CGCCTAGCGAGGCAATTTCTATAATACCTGCTAGTT 1028210 30 100.0 36 .............................. GTGCCTTTGGCTACTATATCTTGCAAATTAATAAGA 1028144 30 100.0 36 .............................. AGTGAAGCGAAGCGGAAGGCAGTAGAAATACTGATG 1028078 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : TAACAAAACAAATCTATCATCTCCTAAACTTATGATTCCAGAATGCCCTTGTGCTGGTTGAGCGCTAAAAGGATACATCACGCCTGTTGGTCTGCCATTTGACACACCCTCAAAGGATTTTAGTCTATCGGTTCGCTTTGTTTTTTCAAATTTACCATTTGTGCGAAGCAACTCTGGCGCATCATCTGGGACATTTATAAACGAAGCAGCTGGCAAAATAGCGTGTCCTGCTAATGTGGCGCTAAATTTTTGCTCAGCTAAAAGCTGTGAACCAACTAAGATAAAAGCTACAAAACAGCTAAATTTTTTCATGTTTTCCTCCTGTAATTTTAAGAGAATACTACAGATTAAAAATAACTTTATAGAAACATTTTAATACTTTAATTATTTTATGATATAAACATAGATGAAATTTAAGATAATAAGATGTTTTTGTTGCTTTGTAGCTAAATTTTGTATTAAAAATCTTTAAGTAGACTATAAAAACAGATTTATAAAAT # Right flank : TTGTTTGGTGATAAGAAAATTTAGACATTTAACCTATAAAATTTCCGTGCTATAAGGAAAAATTTAGATAAATTCTAAAAACTTATCTAAATTTATTTTTTATCTATAAAATTCCGCACTCTCTTTTTAATACAAATTACATAAATATTTATTATAATATAAACAGATTATTAAATTTAGGCTCAAGACAAGTTAAAAACTTTTAAAGGGGTTTTTAACTACTATGCTGTCGATGAAAAACAAATACATATACCGTTCCCGAATTTCTGAAAAGAAATTTCGTGAAATTCTCAAGTATTTTTGCCTTGATTTAGAAGCTGTAAAGATAGCTGAAATTTGTAATACTTCTAGAAATTCTATCAATAAAATTCTAAAAGAGATAAGAATTTTAATGGCACAAGAATGCGAGGAAATTTCTAAATTTGATGGCGAGATAGAAATAGATGAAAGCTACTTTTTACTTCGCTTTGCTAGTAACTGTAAATAGAAGGAGCTAAAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //