Array 1 77042-76097 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSM01000158.1 Escherichia coli strain JML193 sequence158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77041 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 76980 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 76919 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 76858 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 76797 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 76736 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 76674 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 76613 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 76552 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 76491 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 76430 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 76369 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 76308 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 76247 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 76186 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 76125 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTCCGTAGCACTAAGTTAACGGGCAAATTAATACCGTTAATTGAGGAAGTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGATATTC # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17889-16884 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSM01000099.1 Escherichia coli strain JML193 sequence099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17888 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 17827 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 17766 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 17705 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 17644 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 17583 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 17522 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 17461 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 17400 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 17339 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 17278 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17217 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17156 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17095 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17034 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 16973 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16912 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGTCTTCCTCACTTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //