Array 1 2270852-2270606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTEB01000001.1 Staphylococcus capitis strain CR03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 2270851 30 100.0 41 .............................. CTTCTAAGACGCGATATGATTCTAATTGGTCTTCATTCGAT 2270780 30 100.0 44 .............................. GATATACTCCTTTACCATGTATTAATTCTGGACCACTATTCGAT C [2270775] 2270705 30 100.0 39 .............................. CATATTCGATCGTGTATATCAAAACTTTATGCATTCGAT 2270636 30 96.7 0 ..........................G... | T [2270608] ========== ====== ====== ====== ============================== ============================================ ================== 4 30 99.2 42 AACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : ATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAATTCGAT # Right flank : CATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAATCCTCGTAGAATAGAGAAAAAGTATTAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 2279974-2279582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTEB01000001.1 Staphylococcus capitis strain CR03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2279973 36 100.0 34 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTA C [2279961] 2279902 36 100.0 35 .................................... ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG 2279831 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 2279759 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 2279687 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 2279616 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.6 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TAAAGCTAAACATGTTAATGAAGTTTATCTCATCTCTCATGCGCTTTTAGAGACAGGTTCAGCTAAAAGTGAATTGTCTAAAGGTGTAGAAATCGACGGCAAAAAATATTATAACTTTTATGGTGTAGGTGCATTAGACAGTGATCCTGTTAAAACAGGTGCAGAATACGCTAAGAAACATGGTTGGGATACTCCACAGAAAGCTATATATGGTGGTGCTGATTTCATTCACAAACATTTCTTATCTCATGAAGATCAAGACACGCTGTATAGTATGAGATGGAACCCTAAGAATCCTGGTGAACATCAATATGCAACAGATATTAAATGGGCTGAAAGTAATGCAAGCATTATTGCAGATTTCTACAAGAACATGAAGACTGAAGGTAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCC # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 3 2467677-2467140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTEB01000001.1 Staphylococcus capitis strain CR03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2467676 36 100.0 37 .................................... CTAGATACCCAGAACAAAATAGGTCTAACGAAACAAT 2467603 36 100.0 35 .................................... TACTACCGCCACAAATTCTAGTGATTTTATTTACT 2467532 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 2467460 36 100.0 34 .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 2467390 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 2467320 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 2467248 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 2467175 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TAGAATGTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTAATTGAAAAAGATGGGAAGAAAGTACTTCAAATCACAGTTAATCATAGTCATTGGATTACTGGAATGACTATTGAGGGTAGCAAAGAGAAAATTATTAGCAAAGATGCTAGTAAAGACATGAGAACATCTGAATTTGTGGTAAACAAAGCTTCTGGTAAAGTAAACGGAACAATTGCAGTTTACATCAATGAGCCAGTAAATGGTAAGCCATTTAAATATGATCATCATTACAATATTACTTTTAAATTTGATGGTAAAGATGGTGGAGCGACTGGATCACCAAATATTGTCCAAGATAAATCAACTGCTGAAAATCCTCAAACTAGTGGTGGAATCCCTACATATACATATTTAATTCCTATAGCTTCTCTATTTGTATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //