Array 1 38912-36450 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSTF01000032.1 Vibrio cholerae strain DL4214 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38911 32 100.0 33 ................................ TTTGAGGATGAAGCAGTGCGCGCAGCATGGTGT 38846 32 100.0 33 ................................ AGATTCTGGCATCGTTCTCACTGGCCAAGGTGT 38781 32 100.0 33 ................................ GATAAATCAGACGTAATATCTGAGATTAAAAAA 38716 32 100.0 34 ................................ GAAACCAAAAAAGTAGATATTGATATCTACGTAG 38650 32 100.0 34 ................................ GCCATTGACTGCTCAAACTGAGCGGCGATCTTGA 38584 32 100.0 34 ................................ CAGATCAGGAAGATCAACGGTTGCAACGCCAGCC 38518 32 100.0 34 ................................ GCCTTCAACAGTTACCTGACCAGCAAACAAAGCT 38452 32 100.0 34 ................................ ACGTATGGCGCAATTTGCAAAGTAGAAATGTATT 38386 32 100.0 34 ................................ GGTGAAGTCGTGATCGGTCAGAACAGCCGAACCA 38320 32 100.0 34 ................................ ACGTCATGGTTGACGGCTGTTTGTACATTTACGG 38254 32 100.0 33 ................................ ATGAACCTCCCACAATTGCCAACCGTATGGTAT 38189 32 100.0 36 ................................ AAATTCAACTTGGTGACAACCTCATAACGTTTGAGA 38121 32 100.0 33 ................................ CGTAATAAAGTCATTACTGAAACAAAAGGCGCG 38056 32 100.0 34 ................................ TAGCCCAATACACTATCAACACCGTGGATAAAAC 37990 32 100.0 33 ................................ TCAGAACTGCATCGTACAATTGTGACGCACCAG 37925 32 100.0 34 ................................ AAGGAAAAAGCAGCCGATCGAGCGCATCAAGTTG 37859 32 100.0 35 ................................ GAGGCATTGGAAAAACAGGGCAACAAGTAATATCA 37792 32 100.0 33 ................................ AGGTTGGTTATGGTGAATCAGCTTGTGTAGATC 37727 32 100.0 34 ................................ AGTCACACCTTTATGCGGGGGCGGTTGTTATCGA 37661 32 100.0 33 ................................ TGGTAAATCTAATCCCACAGGCAAGCAAACGAA 37596 32 100.0 33 ................................ GTGATCATCACCTTGAGCGAGTAGCGCAGATAG 37531 32 100.0 34 ................................ ATGCTCGCTTAGTTGGTGATTTGCTGTAACGCTC 37465 32 100.0 33 ................................ AAATCAGCACACGAAATGGCACGCGGAACTGTT 37400 32 100.0 33 ................................ CAGTGGAAGCTGATAATTTTAGTGCTGCGGGTC 37335 32 100.0 34 ................................ CAAACTGATGTACTCGCTATCGCTCGACACAACA 37269 32 100.0 34 ................................ TTGAGTGTTAACCGCAAAACGGGCGAATTGACGG 37203 32 100.0 34 ................................ CCGTTCTCCTGTTCCTCAACCTCAAATATGGTTA 37137 32 100.0 34 ................................ GATTTCATCGGGTAGGAACGCGGGCGAATCAATG 37071 32 100.0 33 ................................ TTGATCCAATCTTTGGCAATCTGCTCATCCGAG 37006 32 100.0 33 ................................ AGATTGAGTCGGAACTGGGTATCAATAAGAATC 36941 32 100.0 34 ................................ CTAAAACCGATTGCCGAGAATCCTGATTCCAACG 36875 32 100.0 33 ................................ AAGAATCTTGCTAAGTTAGAAAAGAAATCAGTT 36810 32 100.0 34 ................................ AAGGTGTTTCCTCCCGATTTCGGATAACCGAGCA 36744 32 100.0 34 ................................ TCTAGGGATTTTGCGAGCATTTCCGCGCATTGCG 36678 32 100.0 34 ................................ CAAAAGCAGAACATCAACCGAAGAAAGATGATTA 36612 32 100.0 33 ................................ TGAGACTTTTGGCATGACCGAATATCAAGAGTT 36547 32 100.0 34 ................................ AACAACCTTGGCCAAGACGAAAACTGATGTTGTC 36481 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAATCGCCTCAGACAATTAGCTAAGGTGTGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGAAATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTTGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATTTTATAGTCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTTCCTCTAAGAAGAGGCA # Right flank : AAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAAGGGGACACTTTACCTGAAGCTCCAAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTCGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCAATTGCTGCGAGTATCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 36922-38299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSTF01000024.1 Vibrio cholerae strain DL4214 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 36922 35 100.0 36 ................................... AACCCTAGCTTTTGGTTGTTAATGTGCCATTGCTTT 36993 35 97.1 35 .........T......................... GCAATGTTGGTTGTAGTTGGTCTTTCCATTAATAT 37063 35 97.1 34 ......................G............ TGGATGAGCTTCGTCGCGACGACGCCAGCGTTGG 37132 35 100.0 37 ................................... TAACGGCGTGGCGGTTACGTAGAGACTGTTGGCTTTC 37204 35 100.0 36 ................................... TTTATCGCCTTCGCTGTCCACGTAAAACTCTACTTG 37275 35 91.4 34 .............T....A...............T TGCCAAACACAATTGCATCGTAAAATTTGCTTGT 37344 35 94.3 36 ..C.G.............................. TTAATGATGGTGGTAGCAAGGTCGGTCACAAATAGC 37415 35 100.0 35 ................................... GTCGAACCAACGTTCATCAAATGTAGCTATAGTAT 37485 35 100.0 36 ................................... TGCATCGGCCACCGCCGCAACCGAACCCGCTTGCAC 37556 35 100.0 35 ................................... CTGTTGATGATTGAGTTACTGTTACTTCCAGATAA 37626 35 100.0 35 ................................... ATAGCCCACTTTCTTGCGCGATACCGTGGTGATGT 37696 35 97.1 38 .........................T......... TCCCAGTGATTCTGGTAATAACGAGCGCGAGACTTTAA 37769 35 100.0 37 ................................... CGATCATGCTTATTTTTCTTTTTGTTGCGATTGTTCT 37841 35 100.0 35 ................................... ATCGTTGGGTTTAGTGGATCTTGTGGGATTAACAT 37911 35 100.0 35 ................................... AGCATGAGTTTGTTCACTTCAAACACGGTTATTTT 37981 35 100.0 36 ................................... TTCCAAGACTGGGTCGTGGCCTTCAGATTTTTGTTT 38052 35 100.0 35 ................................... AAAAAGAGAGGAGTCGCAAGGGCGCAAAACTATGG 38122 35 100.0 36 ................................... AGCGCCGTTTCGAGTTCTTTGTACGTGAATTGTTTT 38193 35 100.0 37 ................................... GTGTTGATGTTTACAGTTCAGTAGTCGCCTTTGTTCG 38265 35 91.4 0 ................................TTA | ========== ====== ====== ====== =================================== ====================================== ================== 20 35 98.4 36 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : GATTAGAGAGGTGAAAATAGCGCTGAAACTAGGCAGTACACCCAAATTTTGGAGGCCATAGAGCATGAAAGTCTACTTGGCGTGTTTTGATGTTGACGATGATAAAAAACGACGCAGATTGAGTAAGTTGCTGCTTTCCTATGGCGAAAGGGTACAGTTTTCCGTTTTTGAAATTACGCTTAAAAACGAAGCAAGTTTGAAAAAGTTGCTTCAGCGGTGCAAACACCATGTTGATGAGGGAGACAGTTTACGCTTTTATGCTTTACCATTGAACGCCCGAGAAGGCTCGTTTGATATCGATGAGGAGCCAATAGCACGTTTCCCACAGGCCGAAATTCTCTGAAGGTTTGCTCTTTAACAATTTGCCCTTTCATCCGCTGAAAAACTTGGCTAAGCTGAGGTGTCTAAATTTGGTGAAGCGAACCCTGACTTGTGGATAACTTTAAGTCAATCAAAAGTGCTCTCTATCTTATTGAATCCGAAACTCAATTTAAGGGTAA # Right flank : ATTTAGGATGGGATTTGATCCTCGGTATTGGTGGTGAACCTAGTTATACTTAAGGCAACAGCGATAACTTGGAAGTGGTATGCGTTTATTTTTAGATACCGAGTTTACAGGCCTAAAGCAAGACGCTGGGCTACTCAGCCTTGCATTGGTCGATGAGCACGGTAGGGCTTTTTATGCAGAGTGCCAAGCAAGGTATAACGCTCCAGTGGATAACTGGATTACTGAACATGTGCTTGCTCATACTCGCTGGTTATCCTTATCTTGTTGCGCGCCAAGTGAGTGGAAGCAAGAGGGGCAGGTGCTGTATGGTTTTGATAGTGATGAAAATATTGCCCACCAGCTGAAACAATGGTTAAGCCAGTATGATGAGGTAGAGTTGTGGGCTGATTGCCCAGCTTACGATTGGGTGCTGTTTTGCCAGCTATTTGGTGGCTCGCAGTATTTGCCTCACCCACTCTCTTATGTGGTGAATGATTTCGCTACCCTGCTGACGTTACAAG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //