Array 1 463923-463294 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000002.1 Bacillus sp. WP8 strain DE0145 NODE_2_length_889006_cov_32.518463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 463922 32 100.0 34 ................................ CATCATCTGCTTATGGAATGGTAAAACCGTTGGC 463856 32 100.0 35 ................................ AAAGCAGGGTAATGGCTTTCTAACATAAAAATACA 463789 32 100.0 35 ................................ AAAGCAGGGTAATGGCTTTCTAACATAAAAATACA 463722 32 100.0 36 ................................ ATTCCAGAGGAAAAGGCAAAAGAGAAAATGGCTACT 463654 32 100.0 33 ................................ CTTTACCTTTTAAAAAGTCTTGCCATACCTTTT 463589 32 100.0 33 ................................ ATAAATCACGTTTGACCATATATCCTTGACATT 463524 32 100.0 34 ................................ TTGACAGCTACACGCACGACCTTGTCCTCACCTA 463458 32 100.0 35 ................................ CCCTTTTGGATCATTGATCTGAACACGTTCACCTA 463391 32 96.9 34 .............C.................. TTGCAAGTATCTGCACGCCTTATTAAGTTTTGAT 463325 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Left flank : CCATTTCTTTGGAAGTAGGTGATGTTTTTTATGATGGTTGTGATTACGTATGATGTCAGTACAATTGATAGAGATGGGCAACGGAGACTAAGGAAAATATCGAAAATTTGTCAAAACTATGGTCAAAGAGTACAACATTCTGTATTTGAATGTATTGTAGATTCAACGGAATTTGCAACATTGAAGAATCAGTTGTTGCAAGCTATTAATGAAGAAAAAGATAGTATTCGATTTTACCAAATGGGTAACCAATATCGAAAAAAAGTAGAACAGGTTGGTGCAAAGGAAACAATTTTTGTAGAAGATCCTTTTATTTTTTAAGTGCGAATGTGAGGTGCACATAAATTCCCTGAAGCATTCGCACCTAAAAAGAAAGATTTTTCGACAAACTCTATCTCTATTTGTCTCAATAATTTATACTTTGTATCAACAGAAGGGACTTTTTTATCTGATTATCATAAAAAAGAGCTGTTTTATTTATTTTTTTACTGAAAATCGCT # Right flank : TTTGAGTATTCAGAGGAAGGAATAGCTGTAGCCGTCGCACTCTACTTTAAAATAAGAGGAAAAGGTTAGTTAATGCTAATGGAATAATTGCTGCGATAAAATTATGTAAAGGAAAGAGTGTTTAAGCGGTATTGATGAGAATTATTACCTTATGTAATAAGCTCAAGAATAGGAATAATAGTTTTTCATTGTTTCGTTTTTTGATGTTCTAACAGTTGAATGATTTTCTCGTTTGACCCTTTCATTTGTCTTAATAGAGAAACGGTATTCCCTGTAAATCCTATAAGGATAATATGTAAATTGATGATCATCCACATGCTCTGGCCTCCAATCGCTGACTACTAATACAGTATAATAAGAATGTATAAAATGAACAGTTCGTGTCATAAATCCGACAATTTATGTGAATGGAGAATGTTGAGGGGGATTTATTTGAAACGAGTAGACGTGGTTTCAGCTATTATTTATGACGAGGAAGAAAATCTATTAACGGTCAAGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 276925-277684 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000005.1 Bacillus sp. WP8 strain DE0145 NODE_5_length_306317_cov_38.747215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 276925 32 100.0 36 ................................ ATCACATAGTGGAGATAAAGCAGGATTGGAACAAAC 276993 32 100.0 34 ................................ ATGCAGTTGTGGCAGAGCAAGCGAAATGTGCGAT 277059 32 100.0 34 ................................ TAGTTTTTTATGATAAGACCTATCTAGACTTCTC 277125 32 100.0 33 ................................ TGTCCCCTCCACTTCAAAGACCCCAAAGAAATT 277190 32 100.0 35 ................................ ACACATGCGATATTTTGGTTCTTTATGCAGAAACC 277257 32 100.0 35 ................................ AGTTTGATGCAAGACGATTTAAGGAGACAGACGCT 277324 32 100.0 34 ................................ TTACAACATTAATATACTAAGATAAACATAATTT 277390 32 96.9 34 ...........T.................... CCATTGCGCCATTGCAGCAACTAAAGTAATAAAT 277456 32 100.0 34 ................................ CGCAAAGTCATCATAATACCGTTTTTACGAGAAA 277522 32 96.9 33 ................A............... TTGAAGTTTAATTGCTTGCCATAGTCTAACGGT 277587 32 87.5 34 ...T.......T.........C.A........ ACTTTGGTGATTTGAACCGCTATTACTCACGTAT 277653 32 87.5 0 ...................TA........GG. | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 97.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAAGATTCACAAAAAAGCGCTCAACAAACTAAAAGAAAAAACAGGGGGAGATGTCCGTGCCCGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCATCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATGAAGGAGAAAACAAAATTCTATATTGAAATTTGAGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGAGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAAAGTATATTTTATGAAGGGGAAAACAAAATTCTATATTGAAATTTGAGGATTTTGACTATTATTTCCTGAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTATGTGAGTGCGTGGATTGAAATATTGGTCACGCTCCTTTTGTTACAACTTTTCTGAGTCGCACTCTATGTGAGTGCGTGGATTGAAATACCTTGTGTAACATATAGATAATCCATCGGGAACGTCGCACTCTATGTGAGTGCGTGGATTGAAATAAATT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 278015-278375 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000005.1 Bacillus sp. WP8 strain DE0145 NODE_5_length_306317_cov_38.747215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 278015 32 100.0 34 ................................ ATTGGTCACGCTCCTTTTGTTACAACTTTTCTGA 278081 32 100.0 34 ................................ ACCTTGTGTAACATATAGATAATCCATCGGGAAC 278147 32 100.0 34 ................................ AAATTCAAGTGACTAAGGTTGTTCCACACAAGCA 278213 32 100.0 33 ................................ CCACAACTGGCAGGGGGAAGGTGGAATTGTGGA 278278 32 100.0 34 ................................ TTGATGCTCGAGGATATAGGCAAATCTTTCACTC 278344 32 81.2 0 ...........CA......TA........GG. | ========== ====== ====== ====== ================================ ================================== ================== 6 32 96.9 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CGAGAAAGTCGCACTCTACATGAATGCGTGGATTGAAATTTGAAGTTTAATTGCTTGCCATAGTCTAACGGTGTCTCACTCTATATGAGTGCGCGAATTGAAATACTTTGGTGATTTGAACCGCTATTACTCACGTATGTCGCACTCTACATGAGTGTATGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGAGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAAAGTATATTTTATGAAGGGGAAAACAAAATTCTATATTGAAATTTGAGGATTTTGACTATTATTTCCTGAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TAGTTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAACGAATTCAAACCTGTTGATGAAATAATGAATAAGCACCTTTAGAGCAATAGTTTTTAAATAGGTTTAATAAAGATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGATAAAAATGAGAAAAAATGTATATTATTTTAGAGGTGAAAACAAAATTCTACCTAGAAACTTGAGGGTTTTGACTATGATTACCTAAAAAATGTTACAATTAGGGCGGAAATCGCAGTCGCACTCTATATGAGTGTGTGGATTGAAATGTTTTGTGCAGTTTGCGGTAGATCTTCTTATGAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTAACAGATCCGCCAGCATCTTGTATTTGCTTGTAGTCGCACTCTACATGAGTGCGTGGATTGAAATTGAAATTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 278703-278998 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000005.1 Bacillus sp. WP8 strain DE0145 NODE_5_length_306317_cov_38.747215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 278703 32 93.8 33 ...........T.......T............ GTTTTGTGCAGTTTGCGGTAGATCTTCTTATGA 278768 32 96.9 35 ...........T.................... TTAACAGATCCGCCAGCATCTTGTATTTGCTTGTA 278835 32 100.0 34 ................................ TGAAATTTTGAAGTATACTTTAACTGGATTTTCC 278901 32 100.0 34 ................................ TAAAATTTCATCGTAGTCATTATTGCATTCATCC 278967 32 81.2 0 ..T..........C........AAT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 94.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CACACAAGCAGTCGCACTCTATGTGAGTGCGTGGATTGAAATCCACAACTGGCAGGGGGAAGGTGGAATTGTGGAGTCGCACTCTATGTGAGTGCGTGGATTGAAATTTGATGCTCGAGGATATAGGCAAATCTTTCACTCGTCGCACTCTACATGAGTGTATGGATTGAGGTAGTTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAACGAATTCAAACCTGTTGATGAAATAATGAATAAGCACCTTTAGAGCAATAGTTTTTAAATAGGTTTAATAAAGATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGATAAAAATGAGAAAAAATGTATATTATTTTAGAGGTGAAAACAAAATTCTACCTAGAAACTTGAGGGTTTTGACTATGATTACCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : TGATTGTGTCTTAAACGGGTATGACATTCTCAGAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTTCTTCTTTTTCCTAAATAAACCTTAAAAAATGTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATATTATCCATTCGTAATGAATGATGAAGGAGGAAATGGATTGGGTGAGACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 286613-287112 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000005.1 Bacillus sp. WP8 strain DE0145 NODE_5_length_306317_cov_38.747215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 286613 32 100.0 35 ................................ CAGTCAAACAGGTTGAAATCAATGTCCGTCATCAT 286680 32 100.0 36 ................................ AGCTGCCCTGGCTTCTTCGGCTGCCTGGGCTTCTTC 286748 32 100.0 35 ................................ ATGGCGGTGTTTTTCTGTTTTATCTAATGCGTCCC 286815 32 100.0 35 ................................ TCAATCGCCTAGCGGCTCTTTTTTAAGGGCTTTAC 286882 32 96.9 35 ......T......................... AAAAAGAACATTATTCCTCCATGGGTCGCAATGAC 286949 32 96.9 34 ...........T.................... ATATTGAGAAAGTTTTTTGCTGTATACCAGCTAG 287015 32 96.9 33 ........................G....... CTGAAGCGTCGCTGACTTTTTTGGTCAAAATAG 287080 32 90.6 0 ............G......G.......A.... | T [287109] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 97.7 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCAGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGACAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCGACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGACATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGATTCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAATTCGGTGATCATGTCTTTTACAGCTGAATTGAGTCGCACTCTACATGAGTGCGTGGATTGAAATTACACACCGAGAGCTAAATCAATCGACGTGACAGGTCGCACTCTACATGAGTGCGTGGATTGAAATTAATCTCAAATCATTTTTGGCTGTCATACGACCGGTCGCACTCTA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 287403-288426 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFH01000005.1 Bacillus sp. WP8 strain DE0145 NODE_5_length_306317_cov_38.747215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 287403 32 100.0 34 ................................ AATTCGGTGATCATGTCTTTTACAGCTGAATTGA 287469 32 100.0 34 ................................ TACACACCGAGAGCTAAATCAATCGACGTGACAG 287535 32 100.0 34 ................................ TAATCTCAAATCATTTTTGGCTGTCATACGACCG 287601 32 100.0 33 ................................ AATTTGACCACCTTGACAGCTAGAGCCTAAGTT 287666 32 100.0 34 ................................ CATCATTCGTTTCATGAAAATGCTACTCACCTTA 287732 32 100.0 34 ................................ GCTTTTTAAGCCATTATTTTCACTCTTTAAAGTG 287798 32 100.0 34 ................................ TCTCAAAAAATTATGCAAAGACTTCGGAGTCGAT 287864 32 100.0 35 ................................ ATCAATTTTTTTATAACCAACTACTTCGGCCAACA 287931 32 100.0 34 ................................ ACTACTGAATGCTAATAGCACTTCTAGGGTTATC 287997 32 100.0 35 ................................ CCACTCTTTCTGCTTTTCTATGAAGTCGTTCGGTT 288064 32 100.0 37 ................................ TCATTCGCTGTAATTGCAGCCGCAGCAGTGTTAGCGT 288133 32 100.0 35 ................................ TTTGAACAATTCCCACGCATTCACCCCCTAACGGT 288200 32 100.0 33 ................................ TCGATTCCTTTTTATCAATCGCAGGCAATTCAC 288265 32 100.0 34 ................................ TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 288331 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 288396 31 71.9 0 A........A....A.....A.A.-..C.C.G | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 97.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATAAAAAGAACATTATTCCTCCATGGGTCGCAATGACGTCGCACTCTATATGAGTGCGTGGATTGAAATATATTGAGAAAGTTTTTTGCTGTATACCAGCTAGGTCGCACTCTACATGAGTGCGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCGCACTCTACGTGAGTGGGTGGATTAATAATTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGATTCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : GTTTCTGCGAATTACATAAATTCAAATATCTATCCACCTAAATCCAAGCTCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATATTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACTCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATGATAATCTCTTCAATTTCATCGAATCGTGCACGCAGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //