Array 1 53592-53232 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGM01000027.1 Ligilactobacillus agilis strain 273 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 53591 30 100.0 37 .............................. TATTAAGTGATACCAGTAAGATAAATAACATATGCTA 53524 30 100.0 35 .............................. TTCTGTTGTCGGGGAGCTTTTTGCTTTTTATTTCG 53459 30 100.0 36 .............................. TTAACGACGGTGTTTTGAACGACTGGAATGCTTACC 53393 30 100.0 37 .............................. ACTGAACCATAGGCTTAGCCGCCATCTGCGTTGCTTG 53326 30 96.7 35 .............................G CAAAGCGCTAACTTTGGGTTGCAATTCCCAGTTAC 53261 30 93.3 0 .................T.A.......... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.3 36 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTCTTCATGTTGGTGAAATTAGGCATGCCGAAACTAAGACGTCTGAGTAGTTTGATTTTACGGTTAATTCCTTCAATAGGACCATTTGAGTATTTAGCAAATTTAGAATTAGCTGCATTCAAAACGTGGGCTAAGTTTTTATCTGTTGTTAAAGTGTTTAAGGCTTGAATTAAGTGATTATTGTCGATGTTTTTAATGTTTTTAGGGTAAACCTCATCACATTTCTTAGTTCACTGGACTTTTTTATAAGAAATTGTTTGTACCTAGAGTGTTGCGGTGAAGCGCGTTTTTTACTAGTGATATTTGGTTATAGAGTGCTAGTATCTGTTGACCTAAGATAAGGTGAAATAGTACTAGTATCGACAGACGATAAAAAGGTTGATATTATAGACTTTGAAAGAATTTAGGAAAAAAAGTAATATATAATTGAGAGTGAGATTGGATGATAGACAGAATATATGTAAAAACTAATTGATAGTACAGGTTTTTGGGAGTGCAGT # Right flank : TTAGCTAATAGCGACTCGAAATCAATATTGGTTATCAAGAAAGCGGGTAGCTAGAAATAGTTGCCCCTTTTCATATTCTAAATTGCAAGTACTTCATAATAGCATGTATGTAAATATGCTACTAACACGGACATGGTACAGGGGGACTATATCAAAGCGTGCTTAGCCGAGATTGTAGGAGAAAGGGTTAAGTCCACGCATGTGGGGAAAATCCTAACCGATATTAGGTGCGTCTATCTTAAAATACTACTATAAATATAACTAGTCTATGATTGAAACGTGAGCATTCAATCATAGGCTGGTTTAGTTTAAGCTAGTTATCGTTGTGATAGTAATTAATCAATTCTTCGTAGGTATCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 158-580 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGM01000052.1 Ligilactobacillus agilis strain 273 contig52, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 158 30 100.0 36 .............................. TTTGATTGCTTGTTTATATTGTTTAAGAGAGCGGAA 224 30 100.0 36 .............................. GAGCCTTGACGATTGGAAAACGTGGCTTTTGGGGGT 290 30 100.0 36 .............................. GAAGTGAAATCACCATTACCATATTCGTTAATGTTG 356 30 100.0 35 .............................. CAAAAAGAGTCACAAAACATGACGATTACGAGGGA 421 30 100.0 34 .............................. ACAATTGGAGGCGATTGTTAATACCGTTCAAGGA 485 30 100.0 36 .............................. TAACCATTCCAGTCAGGCGGTGACATTGCGTTACAT 551 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 ATTTACATTCCTCTTAAGTTAAATAAATTC # Left flank : CCATTTATGTAACCTCCTTTCGAGAAATATTGAATCGCAATATACAGAAGCTATAGGAAGGCAACTTAAAGGTTACCATGGTAGAAATAGATAAGTTAGTTTAGCGGACTTGACCCCTGATTAAAATCAGAGGTTTGCGCCCGTTTTATCAACATTAA # Right flank : CACTGCACTCCCAAACCTCCGTACTACCAACTAGTTTTCACATACATTCTGTCTATCACTAAATTTCACTCTCAATTACATATTACTTTTTTCCATAAATTCTCTCAAGTCCCTTAATATCAACCTTTTTGTTATCTGTCGATACTAGTACTGTTTCACCTTATCTTAGGTCGACAGATACTAGCGCTCTATAACAAAATATCACTATTAAAAATGCACTTCACCATAACAATTTTGCAGCTAAATTTTCTTATGAGAAAAAGTCCAGTGAACCAAGAAACGTGATGAGGCTTACCCTAAAAACGTTAAAAACATCGATAATGATCACTTAATTCAAACCTTAAATACCCTACTTTAACAACGGATAAAAAACTAGCCCATGTTTTGAATGCAGCTAATCCTAAATTTGCTAAATACTCAAATGGCCCTATTGAAGAAATCGACCGTAAAATCAAGCTACTCAGACGCCTTAGTTTCAGCATGCCTAATTTCACCAATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 39716-41643 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGM01000008.1 Ligilactobacillus agilis strain 273 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 39716 29 100.0 32 ............................. TCATTTATAGTCTATGATGACTCAGTGGCACA 39777 29 100.0 32 ............................. CAAGGTTTATTTCAAGCGTGGTCACTACGTGG 39838 29 100.0 32 ............................. CACTGTCTTACCTGTCCTAGGTGGTGATTGAA 39899 29 100.0 32 ............................. AAGCCTGTGCTTTACGGTGTGTGCAGAAGCGT 39960 29 96.6 32 ............................C TAAGGCTTCTGCAACAGCCGTAAAGTGTTTCT 40021 29 100.0 32 ............................. TTTCGTTTGCTGATGAAGTTGTCAAAGATATT 40082 29 100.0 33 ............................. ATCAACCGCAGATTAGGGAGTCTGTTCGGGATA 40144 29 100.0 33 ............................. AAAGTCATCTTTGACAGACTTTTTAGCTTTCTG 40206 29 100.0 32 ............................. GAGTTAGGCGATTACTCGGGATGGACTAACTA 40267 29 100.0 32 ............................. AACTAATAGATAATCTATAACCATAACTTATA 40328 29 100.0 32 ............................. AAGCAACTGAAACGCCAAAGAAATTAGCTAGT 40389 29 100.0 33 ............................. TAATGACTGTATGGCAGGAGGATGGATTTGGAA 40451 29 100.0 32 ............................. TACATGTATGAGACCTATGACGTGTATAAGAT 40512 29 100.0 32 ............................. ACTAGAATATGTTAACAGCTACGCTCATACAG 40573 29 100.0 32 ............................. CAACGAGTATAACGAGCTAGTCGCGGGATATA 40634 29 100.0 32 ............................. ACAACTGTATCTTCTTTAAAAGAAACTAATCA 40695 29 100.0 32 ............................. TACTCATTTCTTCCAACTGAAATTACAGAAGA 40756 29 100.0 33 ............................. TATTATTGATTTTTAGAAGGTGTCAAAAATCTA 40818 29 100.0 32 ............................. TGTGATGTATCAGATTCTAATTTCGAACTTGC 40879 29 100.0 32 ............................. AGCACTCTAGGCGAGAACTCCCTTACTTTAGT 40940 29 100.0 32 ............................. TTCAGTTCTGCAAAATAATTTCACCAAGTAAA 41001 29 96.6 33 ............................A TTGGAGTCATTATCGCCATCGCCTCAGTCTGTC 41063 29 100.0 32 ............................. TTTGACCCGGATAATCTGCTAGAAACCGAAGT 41124 29 100.0 32 ............................. AACTTCCCATTCCGTGGAACTGTTGACGAAAG 41185 29 100.0 33 ............................. AGACGGTAAAAGAAAGCGCTCCAAAAAAGGGTC 41247 29 93.1 32 ..............A.............C TTTAACGACTTCAGCAGCTTTAGAGTTGATAA 41308 29 96.6 34 ..............A.............. GGAGGCATACCAACTCCGGAAAGCTGAGAAAATG 41371 29 96.6 32 ..............A.............. TAACTATGATAGCAAGCCCCTCAAAACGAAGC 41432 29 96.6 32 ..............A.............. CTGTTCCGGTAAGATTTAGCATAATCTTTAAG 41493 29 96.6 32 ............................C GATGACTTATACGATTACATTGCTCTGTATCT 41554 29 100.0 32 ............................. AGGCTGTTCGAGCTTGAACGTTCCCCTCATCA C [41559] 41616 27 89.7 0 .................--......G... | A [41643] ========== ====== ====== ====== ============================= ================================== ================== 32 29 98.8 32 CTTCTCCCCACACTGGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTGAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTACAAGCAAGTAGGCTTAGACTCACCCGCTAATCGAGTGGTTGACTTGGCAATGCTTGTAAAAAAGGATAATGAATTTTTAGATAATTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCTCATAATTCTCTGTCCGATTCTATAGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGATTGTTTACGAATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TCCATAATGAGACGTATGTAAATATTTTCCTAACCCCCCTATACTACTAACATGGACATAGTATAGGAGGATTTTTTATGGAGTGCTTACGTAGTATGTATGTTGATTTGTTAGATGTTTTCAGTAAGTATATACAAGTAAGAAGAAAATAAAGTAAAATAATAACGTAATAGGATGGTGAAAAATAATTTGTGATATATAGAATATTTTGAGGAGGAATACCATGGTGGAAAAGGCAACAAGGGGAACGTTAACACATGTTGTCCACTGGGAAGCAAAATTAGGTTGGCAGCATATCGATGTAGAGGAAGCAGAAAAAATATATGATGGAAAAACAGTCAGAAGTAGTGAACAGGTTTTGATGTGTTCACTTTGTCATGATTATGTAACCCTAACTAGGTCTAGTGCTAAGCGCCCTGCGTATTTTAAACATAAAAGGATGGAGCAAGAGTCTGTAAAAGACTGTCCGGATCGAAGTGAAAATAAAGGGGGTATTAGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTGGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //