Array 1 580488-584579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079105.1 Skermania piniformis strain DSM 43998 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 580488 36 100.0 37 .................................... CGGGGCGGCCGGGTCGGCGTGCGTCGCGACCATCGAA 580561 36 100.0 38 .................................... CGCAACTGCCCGGCGACCGCCCGTGCGGTCCGCCTCGA 580635 36 100.0 37 .................................... CTGGCACGTCTGCGCACCGCGCTTGCTCTGCCCGCCG 580708 36 100.0 36 .................................... TAGGTGATCGCGACGCCGCGGCGGATCGCGGTGCCA 580780 36 100.0 41 .................................... GTAGGTGCCGCCGTCGGCGAGCGCACGGGCTCGGTACTCCG 580857 36 100.0 38 .................................... CGGCGGCCGTCACGACTCGCGCGTTGATGTCGGTCAAC 580931 36 100.0 38 .................................... CCCACGACGGCGCGGTCGAGCTCTCGGACAGTCGTGCA 581005 36 100.0 39 .................................... CGTTGCGGGCGACGAGATACCTTCCCACACGATGTACAG 581080 36 100.0 33 .................................... TGGGGCGGTCTGGGGGCGTTTTGGGGTGGGTAG 581149 36 100.0 39 .................................... ATCTGGCCCGGTGTCACCGACATCGGCGGATATCGGCAA 581224 36 100.0 40 .................................... CCTTCTTGGTGGCGCACCACAGCGCCAGATCGAGCAGCGG 581300 36 100.0 33 .................................... GTTCGACGAGGGCGGCGTAGCCAGCGGGGTAGG 581369 36 100.0 35 .................................... CGGAGGTGATCGATGCCGAGTCGAGCAAGGAATTG 581440 36 100.0 40 .................................... GGTAACAAGCTTGCCGACCAGTTGTTCGCGTTCGTTCGCG 581516 36 100.0 38 .................................... TAGTAGGTGCGGATCGGGACCACGTCCCGCTTGCACGG 581590 36 100.0 38 .................................... AAAATCGATGACTATTTTTCGGAGCGCTACGAGAGCAG 581664 36 100.0 38 .................................... ACAACCGCGGTCGCCGGTAATCTAACGGTGCTGACCAA 581738 36 100.0 38 .................................... CCTCGGGGCCACAACCACCGCCTCCTTTACTTATGGGG 581812 36 100.0 37 .................................... TCAGCCAGGCTGATACCGGCGTCAATGTGTCTCCTGC 581885 36 100.0 36 .................................... CTGGCGGCGTCCCTGGTGGCGTTGTTCCCGGCGGTA 581957 36 100.0 41 .................................... CGGAAGGTCGGCCTGTCCGGGCGGGACGCCATGGGCCTGAT 582034 36 100.0 35 .................................... GAACGCTTGCCGGGCGGTATTTGCCACGGAGACAA 582105 36 100.0 38 .................................... CCGCACCCGCCGCTACATAGGCCTCGATGTCTTCGCGG 582179 36 100.0 39 .................................... CCAAAGTGTGGATTTCGCCGGCCGGGTCGGTGATGATCG 582254 36 100.0 39 .................................... TCCCTCAGCGGTGTTCGCGACGAGCTTGAACTCTTTCGA 582329 36 100.0 35 .................................... CCCGGGTCGGGGGATTCGGCGACGAGCTGGGCAGA 582400 36 100.0 42 .................................... GGCGGCGGACGGTGAGGCGTGATCCACGGGCGCCGCAGCCTG 582478 36 100.0 39 .................................... GAGCGTTACGACGCGGCGCTGGCCGGGACGGCCCGCCTC 582553 36 100.0 38 .................................... GCTGCCGACCACCGTGCGCAGGATCTCCCCGGACATGG 582627 36 100.0 36 .................................... TTTGCCGGAGTTCGATTCTCCGGGGTAGCACAGGGC 582699 36 100.0 38 .................................... TCGTAGGCGCTCACGGTTGAGAAATCATGGCAGGTCAC 582773 36 100.0 39 .................................... AGGTGGAAGTCCGCGAACGCCAACCAGTCTGACAGGGTG 582848 36 100.0 39 .................................... GTTGATCCGCGACGCGACGGCGACATAAGGCTCGACCTC 582923 36 100.0 36 .................................... GGGTGCCGGTACAGATATTGCTATCTGCATACCGAG 582995 36 100.0 40 .................................... GACGTCGTCGATGGGACGGCGTTCGTCGCGCTCGACTCCG 583071 36 100.0 36 .................................... CGCGGTAGCCAGATCTTCGGCGGCCCGGGCCACCGC 583143 36 100.0 35 .................................... CGGTCCACCACGCGAGGGCATCTCGAAGTACTCGG 583214 36 100.0 37 .................................... AGGGAGATCCCGCCGTCGGCGTTGCGGCCGTGGATGT 583287 36 100.0 42 .................................... GTTGGCGGCGGCCCGGGTCCTTGTTCGGGCCGCCGCCTGCGG 583365 36 100.0 35 .................................... GCATATTCGGTGATGCCGGACGATTACACCGCGCA 583436 36 100.0 38 .................................... CGGTGACTCCGAATTGCCGGGCGAAGTACGCCACAGGT 583510 36 100.0 38 .................................... CGGAGGTGTCCGCATGATCCGCTGCATCTCATCGGATA 583584 36 100.0 39 .................................... GCCGGCCGGGGGTGGCGACGATCGACCACATACGCAGCG 583659 36 100.0 37 .................................... CCTTGCCATGCCCCGCCAAGCCGCGCCCGGCCCGGCC 583732 36 100.0 37 .................................... GCACCCACGGGAGAAACTCCCGCTGACTCCTCCGCGA 583805 36 100.0 38 .................................... TTCGAGGGTCCGTTGAGCTATCCATGCCGCCCATTGTT 583879 36 100.0 38 .................................... GTCGTGTTGCCACCCGGTGGAGGGGCGGAGGTCGGTGA 583953 36 100.0 39 .................................... CTTGGTGCAGAACTCGGGGTTCTGCGCCCCCAGCTTCAC 584028 36 100.0 36 .................................... CGGCTGGTCGCCTCCGACCTCGACCCCATCACCGGC 584100 36 100.0 40 .................................... GCGATTGGAGCAGTCCGCGGCCCAGCTACTCGCCTGGCGC 584176 36 100.0 38 .................................... GGGGGGTGGGATCACCTGGCAGTGATGGTGTGGCCGGT 584250 36 100.0 38 .................................... GCCGCGCTGGCCAGCGCGGTGCCGAAGTACCTCGCCAG 584324 36 100.0 39 .................................... TTGAACCGCGATCCGACGACGGTCCACAGCACGCCGGAC 584399 36 100.0 35 .................................... ATCATTTCGCCGGGCACCGCCGCGACGATGGGGAG 584470 36 100.0 40 .................................... TAGGGTGGAGCTGCCGGGAATCGAACCCGGCGGATTCGAG 584546 34 91.7 0 ............--......C............... | ========== ====== ====== ====== ==================================== ========================================== ================== 56 36 99.9 38 CTGATCTCCGTCTATATGGCGGAGCAACATTGAAGC # Left flank : CGAGCTGACGCAGTACGTTCCGATGGAAACGAGGTAGCAGAATGGCCAGACGCAGGCATCTCATCGCCTACGACATCAGCGATCCGACTCGTCTTCGGCGAGTCTGCAAGGTGATGGAGGCGTACGGCGAGCGGCTGCAGTACTCGGTGTTCTTGTGCGACCTTTCGCCGCTGGAGCGCTCGCAATGGCGAACCGACATCCACGACCAGATGAATTACGGTGAAGACTCGGTCGTGATTATCGATATGGGGCCGCTGCACAGCTGCGCCGAAGTGACCACCCTCGGAGTGCCGAGACGATTGCCGGCTCCCGGATCGCTGGTCCTGTAGGTTCGACCAGTGGGTGCCCCAGCCTTCACCATGGGAGCGCTCGCATGCAGGTCACGTTGGTCATTGACACCTCGATAGTGGATAGTTTGCGTTATCGACGATATATCGACAACAGACCTCTCGCGAGTCGCTCCTATCTGCGCTGTTCACATGCGGTATATTTCAAGAGCC # Right flank : CGGTGCCGACCGCGACGTCAGGGGAACCCCGATCGTCGTCGGCGCCCGAGGTGCTGCGCCGGAGTAGGAGCTGTCTGCGGCCCGGTCAGCTACACCGAGACTCGAAGATGCGTAGGTCGATCGCGTCGGCCATCGCCTGATACCCGGCGGCGTTCGGGTGTAGCTTGTCCGGCCCGGCGTAGCTCGGCGCGAGGGTGTCCGGCGCTGCCGGGTCACGCAGCGCTGCGTCGAAGTCGATCACGGTGTCCGACCGGCGCTGGTCGCGGATCCAGGCGTTGACTCGCTGTCGAACCGGTTCGGCGTAGGGCAGGGTGAGCGCGCCGTCGAGTAGGGCGCCGCCGGTCGGCAGGATCGTGGCCAGATGTACTCGCAGGCCGGCGGCGTGCAGTCGGTCGATCAGCGCGTTGTAGGCGGCGACGACCTGGTCGTAGTCCGCCCCGATCGGGATGCCGAGATCGTTGATGCCCTCGGCCACGATCACATCCGTCACTCCGGCCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCTCCGTCTATATGGCGGAGCAACATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 781562-783359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079105.1 Skermania piniformis strain DSM 43998 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 781562 37 100.0 34 ..................................... GAGCTGTGACCGTTGTGGCCGAGGTGGGCGTGCA 781633 37 100.0 32 ..................................... CCTCGTTGTTGACCTGCGGGACGATCTCTCGC 781702 37 100.0 35 ..................................... TGGCAGATCGCCCACTGTACATCAGCCAACGAGCG 781774 37 100.0 36 ..................................... CCGATGATGGCCAGCTGGAAGGCTGCAATGACGTTA 781847 37 100.0 37 ..................................... AAATGGGGTCGTCCTTCTCCTTGGCCGCCATCGCTTC 781921 37 100.0 31 ..................................... AAATTCCTCTGCTAGGGCCATGTAGTCGCCT 781989 37 100.0 37 ..................................... CGTACACCATCAGTCCTAAAAGGACTGCCGCTACGAG 782063 37 100.0 38 ..................................... GGTGTCCAGAGTCTAAGTCCTGAGCGTTGGTAGAATTC 782138 37 100.0 34 ..................................... CTCGTCGGTGAGCATGTTGTCACCGACTACCAAG 782209 37 100.0 52 ..................................... GACACCGACGGCGATGACACCGACGGCGATGACACCGGCGGTGATGCCGACG 782298 37 100.0 30 ..................................... CAGTGGCGGGGCATGTGGCGTTGGCGGCGA 782365 37 100.0 42 ..................................... CGCAGTCGAACCCGGCGAACCGGGTGACGAAGTCGTCGTCGG 782444 37 100.0 34 ..................................... TCTCGTGTCCCTCTCCATACTTGTGTTCGTGCTC 782515 37 100.0 34 ..................................... ACCCATCCCCACTTTACTAACAATCTTGCTACCC 782586 37 100.0 41 ..................................... AGTTTGATCCGTCGACAACCAACAACACACCACACACCCCC 782664 37 100.0 33 ..................................... ACGCAGTGCCCGAATCACGTCCGGGTCCTCGGT 782734 37 100.0 39 ..................................... GACTTAGACCAGCGGACATCGGCGGCACGATTACATATT 782810 37 100.0 36 ..................................... GTAGAGCTACCGTAGCTCACTACATCACATCGTGCG 782883 37 100.0 33 ..................................... CGGTGATGATCGACACCACCAACCAGACGCCCT 782953 37 100.0 38 ..................................... TGTCTCGGCGGAACGTTCACTCGTGTCGATGTAGACCG 783028 37 100.0 39 ..................................... CCTCTTCGAGCCATCCTTGGTGTTTGTCTCTGTCCGCCT 783104 37 100.0 34 ..................................... CCGCCGCGGAGGTGGAACGCCGTGATGCCGGCCT 783175 37 100.0 37 ..................................... CGTCTACCGGCGTATCTGCCGGTACCCAGAGCAGCAA 783249 37 97.3 36 ...........G......................... GTGTCGGACCATGTCGCCTCGTCGTCGGGGTGCAGT 783322 36 86.5 0 ...........................-TC..C...T | G,C [783347,783357] ========== ====== ====== ====== ===================================== ==================================================== ================== 25 37 99.4 36 GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Left flank : GTCAGCGGCTTCGGCGAGTACTGGTGCTCGGCCAGTTCGATCGAGAGTCGGGTCAACCGCTCCGGTGCCGACTGCGCGAATCGCCGAACCGCGTCGGAGGGGATGTCGCGGTCCGCGTCCCGAGCGAGAAGGTGGCGCCACGCCGCATCGAGCGAGTCCGGATGCGATACCCGCTCGTACAACGTCGCCGCAGAGATGTCAGCCACCGCCGCCGACGCTACCGCGCCCGGTCCGGCAGCGCTGTCCCCTGTTCGCCCGACATCCGAGTTCAGGCCGGCGCGATATCATTCCGGATCACGCGCGACGTGTTTGCGCGGGTCGGCGGGGCGAATCGGAGGTGGTTCATGACGCGTAGCCACCCCCCGATCGTGTGCAAGGCGCCTGAGCTGCGAAAACGGCACCTCGGCCGATCGTGCGACCGGTCGCCCCGGCTCGTTCCGGGCGATGGTGTGCAGGGAGCTTGCATCGTCGCAGGTACGAGGCTACGTTTTGGGCGAGGG # Right flank : TCGAGGGTGTAGTCGGGGTCTGAAGCCTCCGGTCTCGAGTAGTGATCGGGCGATGTAGTTGGTGAGGTTGCGGAAGCCGAGGGCGGAGCCGCGGAGGTGTTCGAGGCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGCCGGTCGAAGTAGGCCAGGATGTCGTCGGCGCGACGAGTCAGGGTCCGGGCGAGTGTGCGGATCTCGGTCAGGGCTTTCGGGACGCCGTCGCTGACCGAGTTGATCAGCTCGGTCATCAGTTCACGGCCGCGCCTGCGGTCGGGTTCGCGGTAGGCGGCGACCATCCGTTGGTAGATCTCCCAGGTCGCTTCGACCTGGGCGTGGGCGTCGTCGGCGAACAGCTGCTCGAGTCGTTCGCGTTGCCGGTCGGTGAGCAGATCGGCGCCGGTGTGCAGGGTGCGCCGGGCCCGGTAGAGCGGATCACCAGCGCGGCCGCGGTGTCCGATGGTGTCGTGCTGGACCCGGCGTCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 784815-785202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079105.1 Skermania piniformis strain DSM 43998 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 784815 37 100.0 31 ..................................... TCGATTGCGGCGTAGCGGGCGTCAGTTTCGT 784883 37 100.0 36 ..................................... TTGTCGAGCCAGACTTATTCGTCGCGGAAGATCATG 784956 37 100.0 31 ..................................... TTCGCAGCGCAGCGTCCAGATAGGTGTACGA 785024 37 100.0 35 ..................................... GTCCGCCACACCGATCGAGATCAGCTTGGTTTCCA 785096 37 100.0 33 ..................................... TCTCGATCATGAGGTACTGGAGCAGCCCGAGCT 785166 37 78.4 0 .........C.GA........G.......G....TCA | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.4 33 GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Left flank : AGCGCAGCGCCCGGCGGGTGAGCCCAGCTCTGGGTTCGGCCGCGATTTCAGTGTTTTGGCGCCACACATGCCCGCAGCCGGTACAGCGGTAGCGGCGGATAGTGACCAGCAGTGTGGTGGGTCGCCAGCCGAGTGGTTCGTGCGCCAACCGGCGCACGACGGTGTCGCGGGAACGGCCTTCGCAGCCGCAGCGGCGGCACCAGCGATCGGGTTCGGCGACCCGGCAGGCCAGCACCGCCCGATCCGGTTCGACCCGCTGGCCGGTGACTTCGAGACCGAGCTCGTCCAAACCGATGAACGTGTCCAGATCCGGGCGGGCGAAAGTAGTAGCGTCGAGCACGTCGAGGTCTTCCAGATGAGGCGTGTGAGAACCTTCATCTTCGGGAGACCTCGACACCTATCCGGTACCGACGCGCCGACACCTACACCCTCATCTGCGATGAGCCGCTAAAAAGCGAATTGAAACGCCTCGTTGGCGAGGTCGCGGCTGGCGAACAGGT # Right flank : ATCCTGCTGGTCGAACCAGGCCGCGACCCATGGATGCCGGCCGTGCGCACCCCACACGGGCCCCGCCCAAACACCGATATCCAGCAGGATCACGCGCGGCCGTATCGTTCGCCCTCATCCGCGGCGAGCGGGCCCTCGAGATCATCGTTGGTCAGCTCGATACGCGTTGCGCGGATCCGATCAACGGCAGGCGAACCGGTCGCGTAGCCCGGGCGCGGACGATCCGATCTCACGCTCGAACAGGTCCTCGAGCGGCCGCTCTCGCTGGCCGCCGACGTCCCACGTTTGAAGGACATCACTGGTTACTGGTTGCCAAGCGGACTACGGTCGTGAACGGTGTCGGGGTCGGGCGAAGGGGGATTGCGGTGGCTCGGCGGTGGGTTGTCATCGAGACGGGGTCCAACCAGCAGCTGGTCTTCCAGACCAACAAGCAGCGACTCAATGTTGCTGCGTCACGGTTGATCTGGCGCGTCGGGTTCGAGTGGATCCCCGAGGCGATC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGGTGAGTCTCGCTAAAAAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //