Array 1 15595-17183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEB01000003.1 Pasteurella multocida subsp. multocida strain Faisal contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15595 28 100.0 32 ............................ TCTAATAGGAAAATAAAAACATGAAACAACAA 15655 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 15715 28 100.0 32 ............................ AATTCATTGAGGGGCATGGTAAACGTAAGAAA 15775 28 100.0 32 ............................ CTGGGGATTGACGATAGGTGAACGATGAGGGT 15835 28 100.0 32 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACC 15895 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 15955 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16015 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16075 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16135 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16195 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16255 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16315 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16375 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 16435 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 16495 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 16555 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 16615 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 16675 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 16735 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 16795 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 16855 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 16915 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 16975 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17036 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17096 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17156 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97488-99742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEB01000024.1 Pasteurella multocida subsp. multocida strain Faisal contig000024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 97488 28 100.0 32 ............................ ACAACAACTAATATTTTAAATCTCATACAACA 97548 28 100.0 32 ............................ ATTTCGACGTCTTACCCCCCGTATATAGACAC 97608 28 100.0 32 ............................ TACAGGCAATCTGCATTTCATCGTGAACCCAT 97668 28 100.0 32 ............................ CAGATAACTTAAAGTGGTACGACCAGTCAACT 97728 28 100.0 32 ............................ TTAACTCTTTGATATCTTTATGTTTATCATCA 97788 28 100.0 32 ............................ AATGCCTGTCCGCTTGGGCGCAAGTATCAGCC 97848 28 100.0 32 ............................ ATATCACGCTGGGTCACCTACAGATGCCACCT 97908 28 100.0 32 ............................ CAGTTAGTTTGCTTAGGTTTGCTTAGAAGTGA 97968 28 100.0 32 ............................ AGCTATGGCGGACGGTAAGTTCACTTTCAGGT 98028 28 100.0 32 ............................ AGTCAACTTAGAGAGATAACTTAAAGAGGCCT 98088 28 100.0 32 ............................ TCGCTTTGTTTTATTTAATTTGCGACCTTTTA 98148 28 100.0 32 ............................ ATTTATATTTGTCTGCATTTCCTCGCTTTGTT 98208 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 98268 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 98328 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 98388 28 100.0 32 ............................ TTAGTTATACCTTTAGTTATACTCCTTTTCTT 98448 28 100.0 32 ............................ TCCAGATAACTTAATGGTCTAACTTTTAGTCA 98508 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTAACTTTAGTCA 98568 28 100.0 32 ............................ TTATCCACAACTTCTTTAGCTACAAGCTTTGC 98628 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 98688 28 100.0 32 ............................ AGACGGATTCCCTGTTTGGCAAGAATATTTTG 98748 28 100.0 32 ............................ TTTGTGAGAATCTATTAGAGAATGGGTCTGAG 98808 28 100.0 32 ............................ CAAATTGGGGCGCATACACAATTTCACAACAA 98868 28 100.0 32 ............................ TATACGGCAGTTAACGAAGGAAGGTAGGCACT 98928 28 100.0 32 ............................ AAACAGGGAATCCGTCTGGTGCGGTCCACGCT 98988 28 100.0 32 ............................ GACTACCTACTGTTCACCTACCGTTCACCTAA 99048 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 99108 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 99167 28 100.0 40 ............................ CAGATAACTTAANNNNNNNNNNAGGTCTGACCAGTTAACA 99235 28 100.0 32 ............................ AAAGCTTGTCCGAGCTTTAAAGCAGACGTCTG 99295 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 99355 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 99415 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99475 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 99535 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 99595 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 99655 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [99663] 99716 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ======================================== ================== 38 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 273191-273820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEB01000010.1 Pasteurella multocida subsp. multocida strain Faisal contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273191 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273257 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273323 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273389 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273455 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 273521 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 273587 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 273653 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 273719 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 273785 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //