Array 1 4877-5099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLT010000020.1 Enterococcus casseliflavus strain J1100102_180507_H5 NODE_20_length_55276_cov_47.2636, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 4877 29 100.0 36 ............................. CGATACAGCAGCCCGGTTCCTGACAGCTGCAGCATA 4942 29 100.0 36 ............................. TACGGCAGATCACAAATGATTGCATCTACCGATTCA 5007 29 100.0 35 ............................. GTGAATCGTGTATTGATTAAATCTAGTGCCATATC 5071 29 86.2 0 ..............C.AA.....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 96.5 36 GTTTGAATCTAAAATAGTGGAATGTAAAT # Left flank : TTAAATGATCAAAAGAAGCCTGATTTAGCCGAATTTTATGAAGCTTTTGTAACTACTTGGCAAGTTCGTCATAAAGAATTACCTATTGACGACGAATTGTTTGAGGATTGGTTCTTTACTGTTGATGAAATAATTACAAGTAGAGAAATGAATGAAGTCTCTTGGGAAAATTATATTCGAGATAGAGAGTATGCAAAAGGGCTTGAATTGAAGAGTATTATTCATCAATTTAAAGCCTATTTAGAGCAATTATACGGAGTATACAAAGATAGAGAGAATACGAAGTTATAAGCTAAAGAGAAAGGGAATCTTCACACATAAAATCTGTCGATGTCGAATTCCTTTGATTATACCTAGTTACGACAGATGATGAAAAGCACTTAGAATATAAGCTTTTTTTGATATATAATGTTATTTAAGGGAATGAATCAATTCTAATTTTAGACATCGACAGAAAGTGGGCTGTAAAGCCTAATGTTTCAATGCGCAGCAGGTGCGGG # Right flank : TCCGAACACATAAAAGAGGATAAAAAATCATCAAGGGTGAGGCACTTTTTGCATGCTCGTATTTTAGACGATATAATTGAAAATAAAAGAGATCGTCTTGCTAGCTTTAAGCAAGGCGATCTCTTTTCCAATATTTTAGATTTTGTTTCAGTGATAAAGTACTATTACTTATTTACATTCCATTTCTTTTAAATTGCTCGCTGTATTTATAATATCTTTTTTTGAGAAAAACACTAATACTTCGTTTATTTATCTTGAAACGTAAAAATAAATAGTTTGTTTTAACATTATAGAATAAAATTTGATGATTGGGCTGCGGAAGGAGCAACCATTGAAATGACAAATCAACTACGGTGGTTATTTATTGGCAAGACAATTATGTTTTTAGCGCTCGTCAGCTACAACTACATACTCACAAAGAAACTACAAAGAAGAGACAGATACCTTAAAGGAAATGACGGTGTAAAGCATAATGTTGAATTTTGGATGCGATTTAAAGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCTAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 10361-10972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLT010000046.1 Enterococcus casseliflavus strain J1100102_180507_H5 NODE_46_length_11463_cov_49.3872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 10361 29 96.6 35 ..............T.............. CTCAAAAGCTGCGTTGTATGCATGCTTGGTCACCT 10425 29 100.0 36 ............................. GATTCTGAATTTTATGAAATGCCAACCTATGGGGAA 10490 29 100.0 36 ............................. TAGAATTAAGGATTCAGACTGGTTCTTATGATATAA 10555 29 100.0 35 ............................. CTCGATAATTTCAACGGCTTAGCAGAAGCAATGGT 10619 29 100.0 37 ............................. ATTATACGGATGGGCTAATGGGGACCTTGACGGCTAC 10685 29 100.0 36 ............................. TCAGATACTAAATACTTGAAATACTGACCAGAAGCG 10750 29 96.6 36 ..............T.............. AAGGAAGAATGGTCTAAAGACGTGCAACAAAATCAA 10815 29 96.6 35 ..............T.............. CGAAAATACGCACCATTATCGTTAAAACACTCGTC 10879 29 93.1 36 ..............T.A............ TCTTGAAACTCTTTGCGAATATCATCTGTGATTACG 10944 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 98.0 36 GTTCAAATCTAAAAGAGTGGAATGTAAAT # Left flank : AGTGGGGCTGATTGCAGGGAAGCTTAAAGTTAGTTAAAAGTAAGGGAGGTAGTAGTCAAGAGAACCTCTTTTTTACGAAGATTTTATAAGATGAAACTAGCTTTAACGGTTAGCTTAGGTAATGGTACACACAGGAAGATGAAAAAGCAGTTACAGCTAGTTAGGAACAGTTCCTGACTAGCTTTTTGTGTGGTGATCAAAAAAGATTTGGTTAATAAATGACCTAAGAAAATTCAGATTTTCATAAAAGTATAAAAGGACATTAAAACAAGTTCATGGAGAGTAGTAGCCTAGGTTCGGTTCTAAAGTTTTTTACAGACGTTCTCTGTCGATGTCGAATAACCTGATTTCCCCTAGTTACGACAGATGACGAAAAGTACTTAGAACATAAGCTTTTTTTGATATATAATGTTATCTAAGAGGATGAATCACTCCTAATTTTGGACATCGACAGAAACAGGCCTATAAAGCCTATTATTTCAACTTGTAATAGATGCGGG # Right flank : GACGGAAACTATCGCAAGTAGCTCCGTAATTTTCTTGTTCAAATCTTAAATAGTATGTTCCTTTGCCTAGATTAACTGAAAAAGAACCGTTTGTTGAGCCTTTAAAACTAGACGAAGCTGCAGTGCTAGAACCCACGAATTCTTTTTTCTTAATATATACTGTCATTGATGTACTCGAGGTTGCAGTTGTTCTTGTTTATTTATGTGTTACTTTGTATTTTTTTGTTGAGCTTACTGACCAATCACTTACAGATGACCAAGACCAAATACCATATCTTTTGTAAGTAATATCGGTTGCTACGTGTGCAACAGCGGGAATTAGAAAGCTTAACACAAGCAATGAGTATGCTACCTTTTTCATATATTTCTCCATGACTTATCCTCCAACATGATATACTATTATTACGATTGCATGTATACGATAATATATTGGAGAATTCATGAAAAACTTAAAATTAATTTTAATCCATTTTTTTATAATTATAGTTTCT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAGAGTGGAATGTAAAT # Alternate repeat : GTTCAAATCTAAAATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //