Array 1 276173-276708 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483443.1 Aggregatibacter segnis ATCC 33393 strain NCTC 10977 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 276173 37 100.0 34 ..................................... AAAGGATATTTGATGAATATAAGAGACTTGAATG 276244 37 100.0 32 ..................................... AGCGAATAAAATTCATCGCCATTATACTCGTG 276313 37 100.0 34 ..................................... CCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT 276384 37 100.0 35 ..................................... ATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG 276456 37 91.9 36 ......................T.........G...G TACAGCGCACCGTTTTTGTAAACACGGATGTCATAT 276529 37 91.9 33 ...........T.......C............G.... TCTGGGTGGTATTTGATTGCCATTCTTTTATAT 276599 37 94.6 36 ..........A.....................G.... TAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA 276672 37 94.6 0 ...................C............G.... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 96.6 34 GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Left flank : TAAGATAAACAAAGAAAGAGGAAACATGGAATTTATATTAGCTTTTTTAGATGAGTGGTATAAAACTCAATCCATGCGATAAACATGGCGGTATCGCAAGCCGGAAATTGCGAAAAGTACTATCAGCTCTTAATGTTATTTTACAAAAGAACTGTATGCAAACCCACCTCAAAAATACCTTATCACCTATAATATCACGCAACAAAAAATCCAATAACTCTTAGAAAAAGAAAGCCTACCCCAAAGCATTATCCAAACGGACCGATGAATGCACCCTATAAACAGAGATGAAAATGTGGAGAAAGTGAGGTAAAATGGCGCACAAAAATCACATAAAAAATATCGTTTTTTATCACCGCACTTATAACAAACATTAAAAAGAAAATGGATGAAATCGTTCAATATTTAATCAAACCCATACCTTACTTTTCGCATGAGGGGAAAAGTTGGGAAGCGATCCTCCCAAGCCTTATCCATCAAGGCACCAAACCACCCCCGCA # Right flank : CTCATCATCTAAAATCAACCGCCCTTGTGGCGGTTTTCTTTTCTACAAACCAGCATTCCACTCCCATCTCTCCTTTATTCACCATGCTGTTTTCATCAAAACAATATGATGATGAAAACCAAAAGCCTTAAACATACAAACTTGCAAAACCCTCAACGTCCTTAAATTATTACTAAACTAATACCATTAAATTACACAGGAGAAACACCATGACAACATCTGAACATTTCTACGATTTCGTATTATTACCTCCCGCTCGTTTTTAATACGACCGTGAGCCGCAGCGGAAAATGCGCCGGTATATAGAGCCGAAAATCTATACATTCGTATAATTATGTTGAAAAGGAGAAAAATATGCTTGATGTCATTATTCGTATTGCTGAGGCTGTAATTGATGAACTCAAAAAAAACAAGTAGTCAAACTACCCGCTCACCGTGGCGGTTATCACGGTCATCTAGCAAATCTGATACAAATTTGCAAAATCAAAACAAACCAAAAA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 281702-281176 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483443.1 Aggregatibacter segnis ATCC 33393 strain NCTC 10977 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 281701 32 90.6 38 ............G......GG........... ATATAAAAGAATGGCAATCAAATACCACCCAGAGTTTC 281631 32 90.6 39 ............G.....TG............ AGGTTTAAATCGTATTTTAGCGCCCATTAAACGCATTTC 281560 31 87.5 39 ............G......GG..-........ AAATGAACGAAATTAATATCAATATCCCATATTCGTTTC 281490 32 90.6 39 ...................GGT.......... TGCAAATGCTTGATAGCCGGCAAAGCGGTGATAAGTCTT 281419 32 87.5 40 .........C.........GGT.......... ACAATAATGGATAAGGTTTATTTAGCACTTTACAAGTCTT 281347 32 100.0 39 ................................ TGATTTCTGAAATCGAAGCGAAATTAAAGGAGAAGTCTT 281276 32 100.0 37 ................................ GGTGAACCTGCTAGACTCGAGAAGCTTGAGTAGTCTT 281207 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 8 32 93.3 39 AATCCCTTTGGAACAGGGCAAGGTCTTTCGAC # Left flank : AATAAATTTATCCTGCCGTTGTTGCGCCAATTTATCGCATAAATTCAAAAGGTTAAGCAACTGACGGGAAAGTTGTACATCACCGCCATTGCCGGACACTTGCGGAAGTTTGGCAAGTTCGTTGTTGAGTTCGTTGCGCAACGCGGCAACATTCACACCGCTTGCGGTTAGAATCGGTGCCACCGAACCGTCTTGTTGATTTAACAAGGCACTCAATAAATGCACCGGTTCAATAAATTGATTATCCTTGCCAATCGCTAAAGATTGCGCTTCAGCAATGGCTTGTTGGAATTTGGTCGTAAATTTTTCAATATTCATAAGTATTTCCTTCTTCGTTCCATGGATGTTCTGTTGAACATTTGTTCGCCAAATTTAAATAAGATCGTTTTGAGGGATTTCAAGAGAAAAAATGAAAAAATTTAGTCTTGCCGATTAATTAGTAGAAACTTGATTGGCGTGATTTATTTAAAAAACACACCGCACTTTGGTGATTGATGGAG # Right flank : TGCGGGGGTGGTTTAGTGCCTTGATGGATAAGGCTTGGGAGGATCGGTTCCCAATTTTTTCCCTCACGCGAAAAGTAGGGTATGAATTTGATTAAATGTTGAACGTTTTTACTCATTTTCTTTTTAATCTTTGTTCAAAGTGCGGTGATAAAAAACGACGTTTTTTATATGACTTTTGTTCGCTATTTTACCTCAGTTTCTCCACATTTTCACCTCTGTTATAACGTTAAACTGATGGGTAATGCTGTCCAAATAATGCCTTGGGGCAGGCTCGCTTTTCCTAAGCGCCATTGAGAGCACTTATGGGGTAAGGGGTAAATTCGGAGATCATCTTCTTTTTTATGGAAAATCTGCATAACCTCCGTTAAGCATTGTGTTAACAATTTTTCTGAACCTTCAAATAAGAAAATACTGTATTGAATTGGGGTGGCATATTTGGTCATGCGGCGATGAATACGCTGGAGACGTTTGGGGTCGGCAATGTCGTAACCAATAAGGTA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTGGAACAGGGCAAGGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //