Array 1 503372-502045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCF010000003.1 Providencia stuartii strain M4 NODE_3_length_568865_cov_35.705770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 503371 28 100.0 32 ............................ GTAATGAAATGGTTAGGAGAAAGGATCTTAAA 503311 28 100.0 32 ............................ TTTATATTTACGGTTAATAGGTAGTGCATCAC 503251 28 100.0 32 ............................ TACCGGAACAGTAACTAAACTTAGGATATAAA 503191 28 100.0 32 ............................ GCATACAGATTTAAAAATTAGATATCGTCGTT 503131 28 100.0 32 ............................ TTATAAACTGTGTGGAGTGCTTAGGATGGGAA 503071 28 100.0 32 ............................ AAAAAGTTCAGCACAAAGAAGCATCGCATGTT 503011 28 100.0 32 ............................ TATCGATGATTCTGGTTGGATACAGCCTCCTG 502951 28 100.0 32 ............................ TACAGGCCACCGTACAACTGTCCGCACAGGTT 502891 28 100.0 32 ............................ GTTAATATATGCGCCAGTATTGTTTTCATTCG 502831 28 100.0 32 ............................ GAAGGACAGAGACGCTTGCGGCTCTGCGGAAA 502771 28 96.4 32 ...........T................ ACCCTGATAGCGAAAATAAGGGACGTTAAATA 502711 28 100.0 32 ............................ AACGTATAGTGCAAATCTTTCGCGGTGATAGC 502651 28 100.0 32 ............................ ATAATCCAAGCTGCAGCATCTTCTTGCGACAT 502591 28 100.0 32 ............................ AAGAATAGCAATAAATGGTGCTGAATTGGGAT 502531 28 100.0 32 ............................ TGCAAACATTGAACATATCGGCAACTATATGA 502471 28 100.0 32 ............................ AGCAATAAATGCATCACGAAATTCAATCACAT 502411 28 100.0 32 ............................ CACCAGCCGCCCATTTTCACAGTTGAATATTT 502351 28 100.0 32 ............................ AAAACAGAGCTATTTCTTTGTCACTTAAATAG 502291 28 85.7 191 .....................C...TGC TACGGCTTAGAAGGCCGTTGTTCACACTTCAATTTATCCATCATTGTTCGCTGAACAATAATTAAATCCATCTATTTATAATTGATATTTATTTAAGCGAACTTCTTTATTAGGTTAGTGATGCGTTTAACGCGAGATATATCTTGCTACTATCACTCGATAGCTTAGAAATGAAACAAGATACGGGTATT 502072 28 71.4 0 TA........ATG.......T..C...C | ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 20 28 97.7 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTAAGTCAATTCAGCAGGTTCCCGAGCAATCTGTGCCTGTGAGTTATATTCGGCGCCATGTGAAAGGGAAAAGGCGAATAGAGGCAGATATGCAGAAAAAAGCGCAGCTATGGTCGGCGAAAACAGGGCAATCGTTGGATACCAGTTTAGAGGCGTTATCCAAAAGCAAGCCTAGAGCCAACAATCGCTTACCCTTTATTTGGGTTGAAAGTTTACACACCAAGCAAACTGAGGCGGGCGGGCGACCTTTTCCGTTGTTTATTGAAAGGGTGGAGTCAGCACAAGAGCAAAAAGGGCCATTTAATTGCTATGGTTTAAGCCAAGTAACGAATGGCTTAAATTTGGTTGCAACGGTTCCTCATTTTTGACCTTTATTTTTTGCTCTTTAAAAATTGAATTTAAAATCAATAAGTTATAATGTGGGTGAAATAAAAGGGTATTTTTAAATAAATACCCTTAACGCATTGTTATCACATATTTTTTGCTTTGAAGTTTATA # Right flank : ATAGTAGTAAACCTGAAAAAAGAGACGGGTTTTAACTACTTTAATGAGGGGAATTATATGGAAATTATCATCAATTTTTCTTGGGTTACATTAATTATCAGATTCACAAAGTGGTACTGATAATGAACTAATGCTGATTGACCGAGTATCGACACTCAAACAAACAAATTAAACATCAGCGAGAGCTGCTCAAATGCTTGGTGGATAAGCCGTTCGGTGTAGCGGGGGAGAATTGAAATAATCAACCCTAACATACTGATGCCAATGGTCAGTGTCAGTGGGAAGCCGACCACAAATACCGACAGTTGTGGAGTCATACGGTTTAAAATACCCAGCGCAAGGTTAAGAATTAAAAATAAGGTAATAAACGGTAAGGCTAACATTAACCCATTAATAAATATGGTGTTGGCGAATTGAGCGAATACCCAAAAACCGTCGCGATTTAATGGTGCGGTTTGAATTGGGATAAGCTCAAATGAATTGACCACAATATAAATAAG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 513199-512030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCF010000003.1 Providencia stuartii strain M4 NODE_3_length_568865_cov_35.705770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 513198 28 100.0 32 ............................ TGAAGTATACGAATATCTGTGCGAAACTGGTC 513138 28 100.0 32 ............................ AATAGACACGCGGTATGCGTTCAATATAAAGT 513078 28 100.0 32 ............................ TGAAGATTTACGCTCGGCGTCGTCTAATGACC 513018 28 100.0 32 ............................ AATTTCTGAAGCTGATGATATTCATCTAGAAA 512958 28 100.0 32 ............................ TGATGCTAAACCGTGGGGTAACGGATCTATTT 512898 28 100.0 32 ............................ ATATCAGCTAACAATGGATCTGATTCTATTAA 512838 28 100.0 32 ............................ CCGGTACACTGGTTTTGCTTTTACCGGAAAGG 512778 28 100.0 32 ............................ CGATTCTTCCACGGCTTGCCAATCATCTTGTT 512718 28 100.0 32 ............................ TATAGTAAAGTACAACCAGTGCCCAACAATCG 512658 28 100.0 32 ............................ TAGCACGCGTAAAGTAAACAATAAGCCGTTAA 512598 28 100.0 32 ............................ ATTCATTCTTGAATAAACAGATTTAGGAATAT 512538 28 100.0 32 ............................ AACGCTTAAATTAGCGGTTAAGTTCGTGCTGT 512478 28 100.0 32 ............................ TGTACGAACTCCATGTATATCACCGATGGAAC 512418 28 100.0 32 ............................ TCATTATGATACCCGCTTACCTTCTCCGCTAA 512358 28 100.0 32 ............................ GCATATCTGGGGCGTCAACCTTTCTTATGTAA 512298 28 100.0 32 ............................ CAGTGGCTGATGCTCTCATGGTTGTAGCTGAA 512238 28 100.0 32 ............................ GTTTCGTCTATGAGATTAAATTACCAGACGGT 512178 28 100.0 32 ............................ CACTGAAGGTATTTATCATTAGTCCAGCGCTG 512118 28 100.0 32 ............................ TATGGAACTTGAAGTTTATTCAATTCAAGGAA 512058 28 85.7 0 .......................TT.TC | C [512032] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAAGCGGCACTAGACCAAATTTCCAATATTGAAGCAAAACAAGGCTTACAACTACAAGAAATTGATAAGTTGGATTTTTTAGCAGATACGCGTTCAATTCAAAATGCTGCTCGTAAAAGTGAGTTGCTTGAGACTAACTGGACAGGCACCACCACGGATTACTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTCAAAGATTTAAACAGCATGTCTTTATTTGGTAGTCGTTAATCATCTAATACTTGAGTTCTACTCAACCGCGCTTTGCCGTTATTGGAGCGCGGTTTTTTTGTTTTTGGTGATTTTTGGGATCCAACGAAGAATGCTTCAACGAAGTTGTGCTATCTTAAATTTACCCTTTGTTTTTTGTTCTTTAAAAAAGTCTCTTAAAACAATATGTTATAAACTGAGTGTAAAAAGAAGGTATTTTCTTATTTTTATCGGTAACAGGTTGTTGTGATTCACTTTACTTATGATATTTTATA # Right flank : AACACGCTATACCCATAAAAAGTCGTTTTGACTGGGGCTTTTGCCAAGCTCTTCACAAATTTTACTTTAGTACCAACTTTGACTTGTTTAGTGTGGGAATGTAGATTCTAATTGACTGTAAAACATTCAATAAACTTATCAATTTAAAAGGATGTTACGTCATTATGGATGATTTTTCACCATCAGATCTCAAAACCATTTTGCACTCTAAGCGCGCCAATATGTACTACTTAGAACATTGCCGTGTGATGCAAAAAGATGGCAGGGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTGTATTTTAATATTCCTATTGCGAATACCACGGTTATTTTGCTCGGAACAGGAACGTCTATTACCCAAGCGGCGATGCGAATGCTATCCCAAGCGGGGGTTTTAGTCGGGTTTTGTGGTGGTGGCGGGACACCGTTATATATGTCTACAGAAGTGGAGTGGATGACACCTCAAGGGGAATATCGACCAACAGAATATCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //