Array 1 204466-205675 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTB01000001.1 Ligilactobacillus salivarius strain OM08-20 OM08-20.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 204466 36 100.0 35 .................................... GGAGCAACTACTACAATAAAGCAACTTGAGTTAAA 204537 36 100.0 36 .................................... AATTTTGTTACTGTGCATATATAACACACCTTTCAT 204609 36 100.0 35 .................................... AATAGAAAATCAATTACTTCTTTCACATTTTTAAA 204680 36 100.0 40 .................................... TACCAAAGAAATTAGAGACGAATACTCTAGCAACTTTATT 204756 36 100.0 38 .................................... CATTAAATTCTTTTTACTCATTTCAACCACTCCTTAGT 204830 36 100.0 37 .................................... TCAAGCTCTAATATGCTACCGTGTGGAATTCTTTCAA 204903 36 100.0 36 .................................... TAGCTACTGTTTAAGCTAGGTAGCTTTTTAAATTTT 204975 36 100.0 36 .................................... GAAGATAATGGGAAAGATTGGTTTATTAAGTTAAGG 205047 36 100.0 38 .................................... CTTGTCTTGTCTGGTGTAATTGATTCCACGTACCAAGC 205121 36 100.0 35 .................................... TCTTACTCATTTCAATCGCTCCTTTTAGTTTTGCA 205192 36 100.0 35 .................................... TTTAGTGAATTCTATTTCCATTTTTTATTTCTCCT 205263 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 205335 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 205408 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 205486 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 205563 36 97.2 40 .....................G.............. CTTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 205639 35 88.9 0 ............................-....TCT | TT [205669] ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.0 37 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2179-3847 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTB01000005.1 Ligilactobacillus salivarius strain OM08-20 OM08-20.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 2179 36 100.0 30 .................................... GTAAAAATGCCAATTCCATTCACAATGACA 2245 36 100.0 30 .................................... TCTCAATGGAAAGGAGCAGGAAACAAGGCC 2311 36 100.0 30 .................................... AGGTCGTGGAACAAGGTTAGCTCCAGGTAA 2377 36 100.0 30 .................................... CAGACTTGGGATCAAGGCGACTTTCTAGTT 2443 36 100.0 30 .................................... TGACGATTGGTGGTGTTGGAAACGAGAGTG 2509 36 100.0 30 .................................... CGGCTTGAGCGCTGTTTTAAGGCGCATCAA 2575 36 100.0 30 .................................... GTCATGAATACCTTAACAGTATTCGTGATA 2641 36 100.0 30 .................................... CGAACTTGATGAAAATAAAACAGTTGAAGC 2707 36 100.0 30 .................................... AAAACAATTGAACAGAACATACTCAATCCA 2773 36 100.0 30 .................................... GGTGTCTTTCTCTGATTTATATAGCTCGTT 2839 36 100.0 30 .................................... AAATGATATACTTATTGCGTAAATAGCAAA 2905 36 100.0 30 .................................... TTTAGCAACTATCTCACGTTTAGGAGATTT 2971 36 100.0 30 .................................... ACGGCGTTGGCTTGTATGCTCCAACATGGA 3037 36 100.0 30 .................................... TCTGGTTGAGCATAATGGACAAAGCTATAA 3103 36 100.0 30 .................................... AAAGACGCTAAGACGTAAATTCAAGTCATT 3169 36 100.0 30 .................................... CTTCTTCCATTCATTTTCCGTCAAACTATC 3235 36 100.0 30 .................................... TGGTTTAGAGAACTAAAACTAAAAACAAGC 3301 36 100.0 30 .................................... TAGCTACTCAGCCCGTGTTTCAAGAAATAC 3367 36 100.0 30 .................................... AGATTTGGCGATTACAAGTGGCTGGGATAG 3433 36 100.0 30 .................................... CAGAAATGGAAAATATGGCTGGTTTGTTTG 3499 36 100.0 30 .................................... CTTGAATCCAGAAAAAACAATATCCTTTGG 3565 36 100.0 30 .................................... AAGAGATCAGAAAAGGTATCGAATCTTATA 3631 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 3696 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 3812 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 25 36 98.4 32 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : GTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //