Array 1 40359-43540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCX01000010.1 Moraxella catarrhalis strain 3481088Y 3481088Y_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40359 28 100.0 32 ............................ AAGCTTGCCGTGCCTTCTTTAAAGCGATATGA 40419 28 100.0 32 ............................ GGCACGGTCAAGGGTAATCACAGTTTTGGTTT 40479 28 100.0 32 ............................ CTATTTTTTGATAAACATTCACCAGTGTCATG 40539 28 100.0 32 ............................ AAAATGTCGGCGATGATGTTGCCCAATTTGCT 40599 28 100.0 32 ............................ AGCAGGTGCCTCATCGCTCATGGTAGATAAAT 40659 28 100.0 33 ............................ AACCCCAATTTGGGGGCAAGTGTGGACATGGAT 40720 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 40780 28 100.0 32 ............................ TGCAAACAGCTCATCACTGATTTCAATCACTT 40840 28 100.0 33 ............................ TTATTTTTGACAAAAAAAACAAACCCACTCATA 40901 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 40961 28 100.0 32 ............................ ATGATTGAAAATGGGGCTTTATTTTAGGAGAT 41021 28 100.0 32 ............................ GGTATTAACAGCAAGATACCAAGCATTGAAAG 41081 28 100.0 32 ............................ ACGATAAAACTGGGTCAAATTGCCTTGTAAGC 41141 28 100.0 32 ............................ AACTTTTTCACGCCACCGAAGATAACTGTTAT 41201 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 41261 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 41321 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 41381 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 41441 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 41501 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 41561 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 41621 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 41681 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 41741 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 41801 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 41861 28 100.0 32 ............................ ATTATATTCGTTATTGGGTGCATTAGTTATAC 41921 28 100.0 5 ............................ TTAGC Deletion [41954] 41954 28 100.0 17 ............................ CAGTATTAATCCGTCTT Deletion [41999] 41999 15 53.6 0 ...............------------- - Deletion [42001] 42014 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 42074 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 42135 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 42195 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 42255 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 42315 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 42375 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 42435 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 42495 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 42555 28 100.0 33 ............................ GGCTTTTTAAAGAATTAAACCGTTGGACGATCA 42616 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 42676 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 42736 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 42791 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 42851 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 42911 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 42971 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 43033 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 43093 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 43153 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 43213 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 43273 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 43333 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 43393 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 43453 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 43513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 55 28 99.0 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //