Array 1 10840-9958 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSG01000025.1 Streptomyces sindenensis strain JCM 4164 sequence025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10839 28 100.0 33 ............................ GGGTGTGGGGATGAGCGAGACCGAGGAGACCGA 10778 28 100.0 33 ............................ GTTCCTGCCGGACGACATCGCCACGGCACTGCT 10717 28 100.0 33 ............................ GTGCGCGTCCACCTGCGCGGCGTCGTAGAGCAG 10656 28 100.0 33 ............................ GCCGGGCCACCACGACTGGGACGGCACCGAGAC 10595 28 100.0 33 ............................ GAGCAGCGCCAGCCGCGGCACCGCCCGCCTGGT 10534 28 100.0 32 ............................ TCTCGGCCAGGAGCGGTCGAGGAGCGGGCGGG 10474 28 100.0 34 ............................ GAGCTTGATCGTCTCGTTCAGCGTGACTTCCAAC 10412 28 100.0 33 ............................ GGCGACCGGCCTGTGGCCCGAGGGCGACAAACC 10351 28 100.0 33 ............................ GGCGGTCCGTCGCGGCGCAGGCCGGGCACGGCA 10290 28 100.0 33 ............................ GGTGTCGGGGAGGATGCCCGCCATCGGTCCGGC 10229 28 96.4 33 ..............C............. GGAGGACACCGCCGTGCCGCTGAGCACCGACGA 10168 28 96.4 33 ..............C............. GCTCGCCTCCCAGGCGGCAGCATGGCCATCCCA 10107 28 96.4 33 ..............C............. GAGCACCCTGGCCGCCGACCTGCGCCACGCACT 10046 28 92.9 33 ..............C.......C..... GAGCGAGGAGAAGCGCCTCGTGGAGCACCGGGC 9985 28 85.7 0 C........................GTG | ========== ====== ====== ====== ============================ ================================== ================== 15 28 97.9 33 GTGGACCCCGCGCCTGCGGGGATGGTCC # Left flank : CGGGGCGCCCCACCCCGTTGGCGCTGTGGCAGGGCATGACTCGTCTTCCATGATTCTGACGGTGGCGGCTCGGTCGGGCCGACGTGCCGATAACGTCGGCGTGCAGTCCGGCACGGGAGCCACGCCCGCCACGACGACTGGAGACGTCGCCGGCGCGCCTCCGCCATATCGCCCCCGTCGGCGCTCGCCCTCACGGTGGCCCTGCTTCTGCTCCCGCCGGATTGTCTCCACACTTCGCGGCCCCCACCCGACTGACCGCCGAGCGCAGGAGAGTGACACCGACTCATAGGCCGACCCATGATCTAGAAACGTGCCGTGGTCACGGGGCTGCCGACGGTACAAGAAGGCTCACGATCCCCTACATGCTCCGAGGGAGCGCACTTGGGAGTCATCGACTTGTGGCAAGAACATCGTCAAGATATGCCTTGCTGCTCGCGCCCCCAAGAAGCCGACTAATGAAGAACGGCGTCTCTGTGGCACAGAGCTGCAGGTCACGAAGC # Right flank : TGTGCCCGCCAAATGCTCACAAACACCATCGTGGTCAGATAGTCCGGAGCCCAGCAGTCAGTGCTCATGGGCAGTAGCTTCTTGCAGGTCACGATGCGTTGTCAGTAGCGCCCTCTACGCTCTGGTGCATTCCGAGTGCTGGGAGCATCGTGGATTTACAGCAGCTGAGTGGGCATTACGAGACCGCCGTAGTCGGGGCGTTGGAAACGCTGTGGGGCAAGTCGCGGGAGCGTGCGGGCGGCACCACGAACCTCCTGATGGCGCACCTCCTGGACACCGCCGCGGTCGCAGAGTTGTTGTGGGACGGTCTGCTTGCTGGTTCAGCGCGGTCGGCGTTGGAGGAGATCGCCGGAGGGCCGGGACTCGGGCGGCGGATGTTCGCTTGGTTGTGCGGGCTGCACGACTGCGGGAAAGCGACGCCGGTGCATCAGCGCCTGTGGCCCGAGGGGGCGGATGCGGTACGTCGGTCCGGGCTGACCTGGGTCGAGACAGCTGCCGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGACCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : GTGGACCCCGCGCCCGCGGGGATGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106-4099 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSG01000029.1 Streptomyces sindenensis strain JCM 4164 sequence029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 106 28 100.0 33 ............................ GTCGACGAACCGGCTCCGGGTGCTCACCGCCAT 167 28 100.0 33 ............................ GTCTGAGCTTCCGGGCTGGCCGGAGAGAGGGAA 228 28 100.0 33 ............................ GGTGAGGAGTGCGACGCCGAGGGCGACGAGGGA 289 28 100.0 33 ............................ GCGGGTCAAGAAGCAGTCCGAGCGCGCATCGTG 350 28 100.0 33 ............................ GTGCCGGTGCGCCGAGCCGGGCGCCGACCCGTA 411 28 100.0 33 ............................ CTACGGGCGGACCTGGCAGGAGTCCGGCATCGC 472 28 100.0 33 ............................ AGAGTTCCAGATCCGGGCCACCGACGGGTCGGA 533 28 100.0 33 ............................ TCGGCTGGTCCGGCAGCGCGATCACCTGGTCGT 594 28 100.0 33 ............................ GGACGGCACCCGCATGGAGTCGGTCCGCCCGGC 655 28 100.0 33 ............................ TGCGGCGGGAAGGGCCACGGCGTCATGGTCCAG 716 28 100.0 33 ............................ GGTGTGCGCCTGGTGCGGCGGCCCGATCCAGCA 777 28 100.0 33 ............................ GGACGGCCCGCACCTGTCGGTGTTGAGCGCGGT 838 28 100.0 33 ............................ GTCGACGATGCTGCGGGCCCGCCTGGACGCGCT 899 28 100.0 33 ............................ GGGGCCGAAGCGGTCCCGCTAACGAGGGGAAGC 960 28 100.0 33 ............................ GTTTGCGAGCGTTGCTGCGGGGTCCGAGCGAAC 1021 28 100.0 33 ............................ CTTGGCGTCCCCGACAGCGGCCATCTCAGGCTC 1082 28 100.0 33 ............................ GACCAGTGGGAGGCCGGTCACGACGCTGACGGC 1143 28 100.0 33 ............................ GAAGGAGACGCCGAGCGCGGAGATGAAGATGTT 1204 28 100.0 33 ............................ GTCGGCGGTGGAGGCCTCGGCGGAGATCAAGAA 1265 28 100.0 33 ............................ CTGATCACCGCCTACCAGCAGTAGCCCCCACCC 1326 28 100.0 33 ............................ GTCGATCTGGCGCAGCCTGGGTCTCAAGCCCGG 1387 28 100.0 33 ............................ GTTGCCGATCTGTCCGTCATCACCGGCACGGAC 1448 28 100.0 33 ............................ GATGGACGGCCTGTCCGATCTGCTGAACTGGAT 1509 28 100.0 33 ............................ CGCAGAGCGAGGACAGCGGGGAGCCGCCATGGT 1570 28 100.0 33 ............................ GCGGTCCGTGAGGGCCGCTCACAGCGTCAGATC 1631 28 100.0 33 ............................ CGATCGTGGAGGCCGGTGACGACGCGACCCGAG 1692 28 100.0 33 ............................ GGGTTTGTAATCATGACGGATCACGAGGGGGAG 1753 28 100.0 33 ............................ GAGACGACGCCCGTCGCCCCGTCGGCGTCCACC 1814 28 100.0 33 ............................ GCGTCGTCCACACCCCCGGACCGGTAGCACGGT 1875 28 100.0 33 ............................ GGCGGAGAAAGCGGCCCAGGCCGCCGCCGAGAC 1936 28 100.0 33 ............................ CCTGTCCCGGGTGCGCGCACGCAAGGCACGCAC 1997 28 100.0 33 ............................ GCGACTCGCCGAGCGCTTCCGACCTCTCCCGCT 2058 28 100.0 35 ............................ GGTGGAGGTCTCGGCCACCGCCGACACCCCGAGGT 2121 28 100.0 33 ............................ CCCCGCGTCCGCCGGCGCACCGGGAGCCGTGGC 2182 28 100.0 33 ............................ TCCGCGGCTGCCCCGGCCGCGCCGAAGGCAACG 2243 28 100.0 33 ............................ GGCCCCCGGCGTCTCCAAGGCGGTTAAGGCCCT 2304 28 100.0 33 ............................ GTCCTCGCGGAATCCGGGATGTACGGGGTGCTC 2365 28 100.0 33 ............................ CCGGGTGTCCGGCATCAGCGCGTGCCGTGGGTG 2426 28 100.0 33 ............................ GACAGCGATCCTCGCGTTCGAGGACAGGCCGGA 2487 28 100.0 33 ............................ GTCGGCGCCCTTGCCGGCAGACCCCATGACGTT 2548 28 100.0 33 ............................ GGCGCGCGACATCGTCATCGACCTCGACCTCAT 2609 28 100.0 33 ............................ GAAGCCCCCCACCTATAGTTGCTGGTGAGAGGC 2670 28 100.0 33 ............................ GGCTCGGGTTCGGGCCCGCGTCCCCGGCGGTGG 2731 28 100.0 33 ............................ CGTCCGTGACGACCACGGGGAGCCCCAGGCGGT 2792 28 100.0 33 ............................ GCGCCTGCTGTATCCGGGCGTTCATCTCGTCGC 2853 28 100.0 33 ............................ GCCCTGATCAGCGACGAGCACCCGGCCGACCGA 2914 28 100.0 33 ............................ CGGCTACCAGTTCTTCACCGACTGACCAGGGGC 2975 28 100.0 33 ............................ GGCGAGGTCGCGAACCTGAACATCCGGGTGAAC 3036 28 100.0 33 ............................ GGCGGACGAGGACGAGACCGCCCGGGTCCTGGA 3097 28 100.0 33 ............................ GCGACGCGCCACAGCTCTCGACGCCCGTTTGGC 3158 28 100.0 33 ............................ GGCTCTTGAGGAGCTGGGCGGTCTGCTCGATGG 3219 28 100.0 33 ............................ GACCAAGCAGGTATCACCGGTCACCACGCCGAA 3280 28 96.4 33 .........A.................. GCATTGGGACACGATCGTGAACGCCACGCGGAG 3341 28 100.0 33 ............................ GATGGCCCGGGAGATCCTGGACGTGGTGGCCCG 3402 28 100.0 33 ............................ GGAGGCGTGCTCCATGGCCTCCCCGCTGGCCGA 3463 28 100.0 33 ............................ GCGATCCTGCGGGCACTCGAGGAGGGCGAAGCC 3524 28 96.4 33 ...............A............ GGGGATCAAGCCGCCGATCGACGCCGGGGCGAC 3585 28 100.0 33 ............................ GGCGAGCAGGGCGACCGCGCGCCGACCCCGGAC 3646 28 100.0 33 ............................ CATCTGGGACGGCCAGGCCAAGGCCCTCAACCT 3707 28 100.0 33 ............................ GACGGGCTGCCGCCTCCTGGACGACCTGGAGGC 3768 28 96.4 33 .......................T.... GGCCGCCACGTCCACAGGCACGAGCGTGGCCGG 3829 28 100.0 33 ............................ CGTATGCCGCAGAACGTGGAAGCCGTCCTCGCG 3890 28 100.0 33 ............................ GAGGGCGGCCAGTTCCAGGTCCGTCCGGGCCTC 3951 28 100.0 33 ............................ GAGGATCGGGATCACGGCGTGCATTCCTACGCC 4012 27 82.1 33 ........G....TC..C.......-.. GGGCAGCGTCGTCGTCGTGCCCTGCCAGACGAT 4072 28 89.3 0 ..C..........TC............. | ========== ====== ====== ====== ============================ =================================== ================== 66 28 99.4 33 GTGGACCCCGCGCCTGCGGGGATGGTCC # Left flank : GCTTGCCTGCAGCATCATCTGTCTCCGACGGCTTCGGGCGGCATTCTGAAACGATCAGTAAACGAAAACAGCCACCCTGCCCGGTAAACGACCAGCTCAGGAAGTG # Right flank : CGTGCGCCGGAAGGCTCCGCGAGTATGTCCGGAGTGATTCCGCACGGCGGGAACTGCCCCGCCTTCACCCGTGCGCGACCGCGGACGATGCGAGCCCCCGGCGTATCCACCAGAGGTCCTGTCCGGTGATACATGGGGCGGTGGAGATGCTCGCGAGGCGTAGAGGGAGTCCCCCCGCCGGGAGGTGCGCAGTACCCGCCCAGCGGCGCCGGGTCGGCCGCGAGCGCCTCCTCCGGAGTTCGCTCGCCTCGACGGTCGCGGGGTGGCTGAGATGAATGTTGGTGACATATCATGTGTATGTATATCGTGGACTATGGCGAAGGGTGGCCGGTATGTCTGTGACCCAGGTCGATCTCGATGACGAGGCGTTGGCCGAGGCCATGCGGCTCATGGGCACCTCGACGAAGAAGGAGACGGTAAACGGCGCCTTGCGGGACTACGTGGCGCGGATCAAGCGACTGGAGGCTGCCGAGAAGTTGGCCGCGCGTGGTGAGAAGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGACCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //