Array 1 243650-242361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIG010000005.1 Escherichia coli strain PBIO863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 243649 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 243589 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 243529 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 243469 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 243409 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 243348 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 243288 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 243228 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 243168 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 243108 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 243048 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 242988 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 242928 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 242868 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 242808 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 242748 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 242688 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 242628 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 242568 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 242508 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 242448 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 242388 27 92.9 0 .......................C-... | T [242369] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 253276-252706 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIG010000005.1 Escherichia coli strain PBIO863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 253275 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 253215 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 253155 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 253095 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 253035 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 252975 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 252915 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 252855 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 252795 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 252735 28 85.7 0 ....................T...C.CT | C,A [252709,252712] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //