Array 1 776994-777244 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP065353.1 Staphylococcus aureus strain AR39_O1_merpol chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence          	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	=========================	===============================	==================
    776994	    25	  76.0	    31	...T.A.C.TT.T............	CACATTATCGTAAGCTGACTTTTCGTCAGCT	CT [777013]
    777052	    25	 100.0	    31	.........................	CACATTATCGTAAGCTGACTTTTCGTCAGCT	
    777108	    25	 100.0	    31	.........................	CATTGCCTGTAGAAATTGGGAATCCAATTTC	
    777164	    25	  92.0	    30	................C......C.	CATTGCCTGTAGAATTTCTTTTCGAAATTC 	ACA [777179]
    777222	    23	  80.0	     0	................--TG...A.	|                              	
==========	======	======	======	=========================	===============================	==================
         5	    25	  89.6	    32	TCTGTGTTGGGGCCCCGCCAACTTG	                               	       

# Left flank :   TGACAAAAGATGATATGACAACATCAGTACCAGGTATTTTTGCAGCAGGAGATGTTCGCGACAAAGGTTTACGCCAAATTGTCACTGCTACTGGTGATGGTAGTATTGCAGCGCAAAGTGCAGCGGAATATATTGAACATTTAAACGATCAAGCTTAATTCGAAGTCGAATTAAGATGTTGAGTTGTAAATTATTTGGATATTTATTTTAATAGTGTCATCACATTGTTAAAATAATGTCTTTCTTTTAAATTAAAACAAATTATATAGAAAACTAGAACTTAGCACGTATCATTTGTGCGTTTCAATGAGTTCTAGTTTTTTTATATGTTATATTAAACTTATAACTTTATGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATT
# Right flank :  GAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCTTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATATTTTTAGAAATTTAATCTAGACATAGTTAAAAATAAATATAAAAACATCGTTGCTTAATTTTGTCATAGAACATTAAAATTAACATCATGAAATTCGTTTTGGCGGTGAAAAAATAATGGATAATAATGAAAAAGAAAAAAGTAAAAGTGAACTATTAGTTGTCACAGGTTTATCTGGTGCAGGTAAATCTTTGGTTATTCAATGTTTAGAAGACATGGGATATTTTTGTGTAGATAATCTACCACCAGTGTTATTGCCTAAATTTGTAGAGTTGATGGAACAAGGAAATCCATCCTTAAGAAAAGTGGCAATTGCAATTGATTTAAGAGGTAAGGAACTATTTAATTCATTAGTTGCAGTAGTGGATAAAGTCAAAAGTGAAAGT

# Questionable array : NO	 Score: 2.51
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCTGTGTTGGGGCCCCGCCAACTTG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-2.70,-2.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.64   Confidence: LOW] 

# Array family : NA
//