Array 1 345-1513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZM01000020.1 Pseudomonas aeruginosa strain AU11991 NODE_28_length_50139_cov_6.5478_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 345 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 405 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 465 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 525 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 585 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 645 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 705 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 765 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 825 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 885 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 945 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 1005 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 1065 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 1125 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 1185 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 1245 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 1305 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 1365 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 1425 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 1486 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11913-10388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZM01000020.1 Pseudomonas aeruginosa strain AU11991 NODE_28_length_50139_cov_6.5478_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11912 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 11852 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 11792 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 11732 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 11672 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 11612 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 11552 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 11492 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11432 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11372 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11312 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11252 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11191 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11131 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11071 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 11011 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 10951 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10891 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10835 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10775 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 10715 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10655 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10595 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10535 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10475 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10415 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 177681-177173 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZM01000003.1 Pseudomonas aeruginosa strain AU11991 NODE_12_length_178025_cov_6.59422_ID_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 177680 28 100.0 32 ............................ TCTTCGCAATGTGCCCATAGGTCCATGTGGGC 177620 28 100.0 32 ............................ TTGCCCAGGCGCTAGGAATATCCACCGACGAA 177560 28 100.0 32 ............................ TTGATCGCCGGATGATCCGCCTTGAACTCACG 177500 28 100.0 32 ............................ ACGTATCCCGAGCGCGAACGCGGCTTGTGCAT 177440 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 177380 28 100.0 32 ............................ AACGCAACGACCGGCTCTACGGGCGCCGACGG 177320 28 100.0 32 ............................ CGCAGGAAAATTTGCTAGCACTTTTCGACCTG 177260 28 100.0 32 ............................ ATTGCGCTCAGCGCGAAGAACCACAGAGTGAA 177200 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATAACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGTATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGGGCGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGTTCTGTACGTGTGAGCTCATCCTCTAAATGGACATACCAAACCCATACAAATCAGCAGCTTGAGATTTTTTGTCCATTGTCCATTTTTTCCCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //