Array 1 269016-270020 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIJ01000002.1 Escherichia coli strain AM22-14AC AM22-14AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269016 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 269077 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 269138 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 269199 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 269260 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 269321 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 269382 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 269443 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 269504 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 269565 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 269626 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 269687 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 269748 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 269809 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 269870 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 269931 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 269992 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295720-297151 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIJ01000002.1 Escherichia coli strain AM22-14AC AM22-14AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295720 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 295781 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 295842 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 295903 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 295964 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 296025 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 296086 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 296147 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 296208 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 296269 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 296330 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 296391 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 296452 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 296513 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 296574 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 296635 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 296696 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 296757 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 296818 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 296879 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 296940 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 297001 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 297062 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 297123 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGTTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //