Array 1 221792-222175 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKE01000003.1 Pseudoclavibacter sp. CFCC 13611 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================================================================================================================================== ================== 221792 26 100.0 35 .......................... TGTAGCCGGATCAGTTGCGGTTAGCGCAACTGATT 221853 26 100.0 35 .......................... TGACACTTCTGTTCCCGGGAACAGAAGTGATGGGG 221914 26 96.2 35 ..................A....... GATCAGTGCGTGTCTCGACGTGGGGAATTTCCCCA 221975 25 88.5 150 G...-.............A....... GGGGTGTATTCAATCCACACCCCATGGCGGAGAGAGATCTCTCCGCGCGCGTGAAGCAGGCCAGATGATCATTTTGCGGGGTCGCGCAAAATGGTCTCCGCGCGCGTGAAGCAGGCATAGCTTCTGTTCCCGGGAACTAGAGCTATCAAC T [221981] 222151 25 73.1 0 .A.C.....-........T.AAG... | ========== ====== ====== ====== ========================== ====================================================================================================================================================== ================== 5 26 91.6 64 CTCGCGCCCGCGCGCGCGGGGGTCAG # Left flank : CGCAGCGTGCACGGCATCTTCAGCCGACACCAGCTGACCAACCGATGGTTCTGGCTGTCATGCCTGCTCGCGATCGCCGTGATGCTCGTGATCGTCTACGTACCGTTCGTCGGCGCTTTCTTCGGCACCGCGCCACTGTCACCGCTGCTCTGGCTGCCGCCGATCGCCGCGATGATCGTGATGGGCCTGGCCCGCGAGGGCTTCGCTCGTGTCAGCGGACATCGGGTGTGAGCGCCGTCTGCGTCTTCGGCAGATGTTGCCGCAGCGTTGTCACGGGCGGATCTGATGGGAATGACGAAGGCCCTGCTCCCCAGTGATTCTGCGGGGTGCAGGGCCTTGCATGTGCTGTAGCTGGGGAGGGGATCGAAACCAATGCGCGATCTGGTGCCATTCAACGAGACCGCTATAGCCCAGTGTTTAGGCGGATCTTCGATTTCTGACGATCACGGTGAGACACGGTAATTCCGATTAGATGTTGCGGAATTGTTGTGGCACGAGGG # Right flank : GGCAGAGAGTGGCCCCGACGTGCAGAAAGGAGTGAAGATCACGTCGGGGCCGTTACGAGGCGGGAACCCTCCGCCCCGGCTTGAGTGGTCAGCCGGTCACGTTCTCGAGGTTCACGACTCGAGACGGACGCCAGCCAGACCACGGGTTTATGTCAGCAGCGGGCTCACCAGTCACCGACCAGGTCTGGTCACCCTTGCGAATGCGGTCACCGGCCTGCACGTCAGCGTCGGGGCTCTCCAGCACCAGCTGTTTCGTGGTGATGATCTGCGCGCGCACAGGGTCGGATTGCTCCAGGCTCTGCTGCGAGGCGAAGAAGCCGTAGACCTCGAGCTCGTCAGGGTGCGCCCAGTCCATGCCGATGACCGTCTCGGGGTCGTACGGGTCGGTCAGGAGGCCGGCCCGCAGCCGGGTGAATACCTCTGCGCGCGGGAACCTCACGAGGCCCGCCTGCGGTAGTTGTTCAGCACGGTCTGCTCGAACAGGCTCAGCCCCTCGAACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGCCCGCGCGCGCGGGGGTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 414060-418604 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKE01000003.1 Pseudoclavibacter sp. CFCC 13611 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 414060 29 100.0 32 ............................. GCCGAGGGGTGCGACTCGACAACGCGCAACAC 414121 29 96.6 32 ............................G TCACATCACGCACGCCTCGCCTCGATCCAGTA 414182 29 96.6 32 ............................T CGGCGCCCAACCCTTGGACCTGTGCAAGGAGA 414243 29 100.0 32 ............................. TCTCCGGCCTTCGCCTTCAGGTCGTCGTAGTC 414304 29 100.0 32 ............................. CGGGAACGCGCCGAGGCACGCAAACAGAAACG 414365 29 96.6 32 ............................G GCCGAGTTCCTGGGCTGGCCTGACGAGGCGCT 414426 29 96.6 32 ............................G CCTCGCCATTGTGCGGGGCTTTTCTCGTCCGG 414487 29 96.6 32 ............................G TTCACCCCCGAGTACATGCTGCTCAAGGGCAA 414548 29 96.6 32 ............................G TGACGGGACGGCGTCACGCATGAACATGGCGC 414609 29 100.0 32 ............................. GACTGGACGAGCTGGAAGGTACAGCTCGCACT 414670 29 100.0 32 ............................. ATACCGCCCAACCAAGACCAAACAAGAAGGAG 414731 29 100.0 32 ............................. CGCAACGAGATCGGCAAGGAGATCGCAGCATG 414792 29 100.0 32 ............................. GCGAGAATCGACCTCACGGCCTGCGAATGCCA 414853 29 96.6 32 ............................T GATGACCTTGCCCTTGCCATTGGCGATTCCTG 414914 29 96.6 32 ............................T GATGACCTTGCCCTTGCCATTGGCGATTCCTG 414975 29 100.0 32 ............................. CAGTCAGGGCTGCCGGCGGCCGACACGAAGCT 415036 29 96.6 32 ............................G TGGACCTGCCGTCATCGAGCACGTGGGCATTG 415097 29 100.0 32 ............................. TGTCTGGGATGGAGACATAGCTCCGGAACTCG 415158 29 100.0 32 ............................. TGTGCGTGCCGTGCTCGCCGCGACCCGGTGGG 415219 29 96.6 32 ............................G TCCTTCGCCCGAGCATCGGAGAAGTAGTGCTT 415280 29 96.6 32 ............................G GCTCGGAGGGCACCGGCCGCGTCCAGTCGAGA 415341 29 96.6 32 ............................G TACCAGAGGGCGAGTTTCTTGAGTGGGGACAC 415402 29 100.0 32 ............................. CACACCACCATGTGTTCACGCTGACTGCGCCA 415463 29 100.0 32 ............................. TCGGCAGCATCGCCGAGGTCGTCGAGCAGCAC 415524 29 100.0 32 ............................. GCGACCTCGAACTGCCCCGACCTCTCAGCGAG 415585 29 100.0 32 ............................. CCGGGGTGGACGGCGGCGACGGCGCGCAGGTC 415646 29 96.6 32 ............................A CAACTGGAAGCCATCGCGCGCAACAACGCCCG 415707 29 96.6 32 ............................G CCACCGTCAGCTACGACACCGTCTACGCGGTG 415768 29 96.6 32 ............................G ATGAACGTCGGCGTCGAGGTCGGTGTGTCGCG 415829 29 100.0 32 ............................. TGTTGATGGATCGAGTAGCGCTGGACTCGACG 415890 29 100.0 32 ............................. ATCAGCGAGGCACAGAAGACGCGCCTGCGTGA 415951 29 100.0 32 ............................. CATCGGCGTTCACGAACGACGAATCGTCGGCA 416012 29 100.0 32 ............................. TCTTTGGCGGCGTCTTCTTCGAGGTTGCCGGT 416073 29 100.0 32 ............................. CCGGGGTTTGCCCAAACTGAGATGGGCTGCAC 416134 29 100.0 32 ............................. CATGTCCGCCGACTTGAAGTACGGTGACCCTC 416195 29 100.0 32 ............................. CACAATGCGGCCATTCCGTGGGGCATGCGGCA 416256 29 100.0 33 ............................. ATACGTCCATTTGGCGAGGCTCTGCGCGTCGTA 416318 29 100.0 32 ............................. GATTCCCAGTGGGAGAACGACGACCTGATGAA 416379 29 100.0 32 ............................. GTCGAGAAGGTGGGCGGCAAGCTGCTCGTCGA 416440 29 100.0 32 ............................. GACAAGGTTCATCTATGAGGGTGAACGCGTCG 416501 29 96.6 32 ............................G TCTGCGAACGTCGAGCCCAGCGCCCACGACCC 416562 29 96.6 32 ............................G TCGACGAACGCGATCGGTGACCCGTCGACCTC 416623 29 100.0 32 ............................. ACCCAGACGGAACAGAGCGACCATGCCGTGCA 416684 29 96.6 32 ............................G CCCCCACCGGTGATGGTGAGGGCCAGAAGCTC 416745 29 96.6 32 ............................A GCGGCGAGGTCAAGCTCGCGTCCCCACGCTCT 416806 29 100.0 32 ............................. GCCACCATCGTCTACCCCCTACACGCCTGTGA 416867 29 100.0 32 ............................. CTGCAGGCGAACATCAACGCGCTTTCGGGCAG 416928 29 100.0 32 ............................. GCCACCATCGTCTACCCCCTACACGCCTGTGA 416989 29 100.0 32 ............................. CTGCAGGCGAACATCAACGCGCTTTCGGGCAG 417050 29 100.0 32 ............................. GGCTCGACGATCGCGCCCTTCGCCCCGACACC 417111 29 96.6 32 ............................G CGCCGCGACGTTCTATCGCGAGTACCAGGGCA 417172 29 93.1 32 ....C.......................G TCTTCGTCTTTCCAAAGTGTGATGCCCTTAGC 417233 29 96.6 32 ............................T CCCACCGTGTCAGCAGGCACCGCCCGCGCCGT 417294 29 100.0 32 ............................. CAGCGGCTGGCTAGACACAGCGAGCGGCTGGA 417355 29 96.6 32 ............................G GTTTCCTGCGTGGTGGCCGAGTCCTGGTCCGG 417416 29 100.0 32 ............................. TCAAGACCCTGCGAGAACACCTCGGGCTCTCC 417477 29 100.0 32 ............................. CAGGGCACGGCAGACGTGTGGTGTCGGTTCGT 417538 29 100.0 32 ............................. TGGAGTAGACCCTCTGAATGGTGCATGACCGC 417599 29 96.6 32 ............................G CGGCGCTCTGCCGCCGTGTGCCCGAAGCCCTG 417660 29 100.0 32 ............................. CGCCGGCCGACCAGGGCCGGGTCAGAGCGGGA 417721 29 100.0 32 ............................. GTCGTGCCCACAGCCCCGACCGCGACGAACCC 417782 29 100.0 32 ............................. TATGGCGACAACAACGCCGGGTTCGTCGCGGT 417843 29 100.0 33 ............................. TGCGCTCACTGTCACTATGTCACCCGCCTGCAG 417905 29 96.6 32 ............................G TCCCGCTCAGCATGACACTCGATCACCTCTGC 417966 29 100.0 32 ............................. GCGTCTACCAGCAGGTCACGTACCTTCTCCGG 418027 29 100.0 32 ............................. GCCTGGGCTTTCGCCTGTGTGGCTGGTCCTGC 418088 29 100.0 32 ............................. TGCATCTTCGGCACCGCTGACACTGAGATGAT 418149 29 96.6 32 ............................T CCGGTGACGCCTTGGTCGAGGAATTGTCTGAC 418210 29 100.0 32 ............................. GGGCTTCAACCGATGTTGAGTCCGACGAACGC 418271 29 96.6 32 ............................G CTGCAGGTCGACACGGCCATGCTAGTCGCGTT 418332 29 100.0 32 ............................. GTGTCATCACGATCGACGACACGGACCGGCTG 418393 29 93.1 32 ........................G...G CGTGCCGTTCCTCTGAACGAAGCAAGGTCGAC 418454 29 96.6 32 ............................G TGACCGTGGAATACCGGAGCAGCCGAGCGCAG 418515 29 96.6 32 ......................G...... GCCGCCGCACACACCCCACACCCCGCCCAACC 418576 29 86.2 0 ..............T....C.....C..T | Deletion [418612] ========== ====== ====== ====== ============================= ================================= ================== 75 29 98.4 32 GAGTTCCCCGCATGCGCGGGGGTGATCCC # Left flank : TCAGACAGATGTTGCCACAGCTGCAGGTGGGAAGTTGAATCGTTCGGATCGCCCAGATTGGTCTTTGCCCACACTGAGCGCGCAGCGGGGGAGAGCTGACTGGCGGCGGCCTGTCTGTGGGTGCCGTTAGCGTCGATCATGTTGTTCCCCCCCCTGAGCGTGAACTGATTGGATCACTGCTCTGGGAACATACTGACACATCGAGAGTGGTAAGTCAATTAGACCACCTACATTCAGCAATGAGTGACTCTGATGTCATACTCATGGCTAAACCCCGCTCGCGCGAGGACTCTGCACGGTTCAGACCGCCTACGGGGTCACCCCTGCGAAAAGCAAGGCGAGTGTGCTCCCATAGTCTACGGATGTGCTCAACGGTTGATGCTAGAGCTCAGCTTGAACGCTCTGCGCTCGCTCTGTTGAGATGTACGTAGGCCTGAGCCACTGTCGTAATCAAAGTATTCCTGCCAGACACAGCAGTACTCCACCAGTAAACTTCAACT # Right flank : TCAAACATCACTTGCCCCCCGTGTGCGCGAGGTGAACCCGTGATGAGTCTGTCTGGCGAAATAGGCGCCGTGATACATCGATGATGACGTGACTCATCGGCTTGCTACTAGGTGCTGCTGGTCACAATCTCCATGACTCGGCGACGTTCCCGTGACTGCATCATTCAATGTGCCTTCGGAGGGCAACTGGCTGGTGAACGCTCCCCGTGGCGACGCAACGACCCTACTCGGGCACGACCCCGAGTTCGCGCACTTTGGCTTCGAGCTCGGCATTCGACGGCTCGACCTGGTGGGTGCCGTCGGCGAAGGCGATGACGGGGATGTTGGTGCGGCCACTGATGCGTTTCGCGTCTTCGGCTCGCTCCGGAGTTGCGACGAGGTCGACATAGTCGTAGGTCACGTGAAGGTCATCGAGCAAAGCCTTGGCCCGTCTGCAGTCACCGCACCAGGCGGCACCGAAGAAGGTGATGGGAGATGTGGATGCGGATGTCTCGGAACTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCATGCGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //