Array 1 8-1232 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHLV01000103.1 Acinetobacter baumannii strain VB24319 NODE_103_length_1271_cov_1.63396_ID_205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 68 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 128 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 188 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 248 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 308 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 368 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 428 30 93.3 23 ............................AA CAATTGCCTGAGAGCCACCAGTA Deletion [481] 481 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 541 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 601 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 661 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 721 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 781 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 842 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 902 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 962 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 1022 30 100.0 31 .............................. GGATGTGCAATTTTGGTCAAGATGTGGGGAG 1083 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 1143 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 1203 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 21 30 97.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TGTTCAGG # Right flank : TCATTGGCCGGCCATTCACAACCCCGATAAGTTCATGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58662-57732 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHLV01000004.1 Acinetobacter baumannii strain VB24319 NODE_4_length_165504_cov_47.8167_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 58661 30 96.7 30 ............................A. GCCCAGAGTTAGCATCTTGATGGTTCTCAA 58601 30 96.7 30 ............................G. AAACAAAGACTTTGATTTAATCTGGTGGAA 58541 30 96.7 30 .............................G AATGGGTATTAGAACTCAGTGAAGATATGT 58481 30 96.7 30 .............................A CTGGCTCAGGCAGAGAAGGCATGTCAATGC 58421 30 93.3 30 ............................CA CTTGGGCATGTTCTTAGATCCAGACACAAA 58361 30 96.7 30 .............................C TACCTGCTAATAGCTTCTTTGCCCTAGTTC 58301 30 100.0 30 .............................. GCTTAACCTTCACGCCATTTGGATAAACTG 58241 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 58181 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 58121 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 58061 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 58001 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 57941 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 57881 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 57821 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 57761 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== ============================== ================== 16 30 92.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //