Array 1 57-696 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKS01000022.1 Escherichia coli strain 102148 ctg7180000008225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 118 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 179 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 240 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 301 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 362 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 424 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 485 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 546 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 607 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 668 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGGAAAAAGAGAAGGTAGAGAAAGCGGAATCTGGG # Right flank : GGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-574 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKS01000074.1 Escherichia coli strain 102148 ctg7180000008330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 118 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 179 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 240 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 301 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 362 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 424 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 485 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 546 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGGAAAAAGAGAAGGTAGAGAAAGCGGAATCTGGG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 563-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKS01000033.1 Escherichia coli strain 102148 ctg7180000008289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 562 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 501 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 440 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 379 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 318 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 257 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 196 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 135 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 74 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGAGGCCTATATCTCTAACCGCATCGGGCTGCGCGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17740-16064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKS01000033.1 Escherichia coli strain 102148 ctg7180000008289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17739 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 17678 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 17617 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 17556 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 17495 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 17434 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 17373 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 17312 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 17251 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 17190 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 17129 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 17068 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 17007 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 16946 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 16885 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 16824 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 16763 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 16702 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 16641 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 16580 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 16519 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 16458 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 16397 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 16336 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 16275 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 16214 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 16153 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 16092 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //