Array 1 45135-44571 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZC01000053.1 Neisseria meningitidis strain MRSN431255 MRSN431255_contig00053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45134 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 45068 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 45002 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 44936 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 44870 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 44804 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 44738 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 44672 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 44606 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TACCAAGATATATCAAAATTGTAGATGAAA # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 1092-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZC01000054.1 Neisseria meningitidis strain MRSN431255 MRSN431255_contig00054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1091 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 1025 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 959 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 893 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 827 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 761 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 695 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 629 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 563 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 497 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 431 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 365 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 299 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 233 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 167 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 101 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : A # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //