Array 1 27086-25004 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZUX01000023.1 Neisseria meningitidis strain Neisseria meningitidis isolate B193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27085 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 27019 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 26953 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 26887 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 26821 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 26755 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 26689 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 26623 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 26557 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 26491 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 26425 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 26359 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 26293 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 26227 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 26161 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 26095 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 26029 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 25963 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 25897 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 25831 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 25765 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 25699 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 25633 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 25567 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 25501 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 25435 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 25369 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 25303 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 25237 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 25171 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 25105 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 25039 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 1430-1260 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZUX01000139.1 Neisseria meningitidis strain Neisseria meningitidis isolate B193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1429 30 96.7 38 ..........................C... CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 1361 30 100.0 42 .............................. ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1289 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 97.8 40 CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Left flank : TGAGGTTTCGGGCAACTTCTAA # Right flank : CTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCGACCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //