Array 1 1263337-1263566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWK010000004.1 Acidaminococcus massiliensis isolate MGYG-HGUT-01556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1263337 36 100.0 27 .................................... CGATAGATTCAGCTCGTTGTTCAGCGT 1263400 36 100.0 27 .................................... TCACTGGTCTGATATCAACCACCAAAA 1263463 36 97.2 32 ..............................A..... GTAGATTGTAAGCGTGCATTGCAGGTTTTTTA 1263531 36 88.9 0 ..........TT.....G.......T.......... | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 96.5 29 GTCTAAAAGACCATATGAATTTCTACTTTCGTAGAT # Left flank : ACAATACAAAATGGATATCTTTGTTTATGTCCAGCAATTTTATCGTGCATTCATGAAACAGAAAGACGCCAAGGATTATCCTGTATTTGAGATGATAAAATGATTATCTTGAGTTATGATATTGCAGATGACAGGCTGCGGAATCATTTTGCCAAGTACATCACAAAATTCGGACACCGCATCCAGTACTCTGTTTACCAAATTGACAACAGCAGCAGAGTGTTGGATAATATAATTAGTTATATCCAAGGCCACTTTGAAAAGAAATTTGGCCAGAGTGACAGCGTCTATATTTTTAAGCTGTCCAATACTTGTGAAGTAGTAAGGATGGGGTATGCTAAAAATGAAGAAAAAGATCTGGTCGTCTTTTGATTTTTGCAAACCTTCGTTTTACTTTGAAAAAAACAGTGAAAATCGTGGAAAATCACTTGGTACAATGGACGGGAACACTATATATTGTGGCAGACTCCAAGAAAAAAGCAATTTTTGATGGCTTAGGG # Right flank : TACCATTATAGCGGTTCGCATTTTCCTCTATTTGCAAAATAGGGCTGTGGAATCACCGTGTCTTCGACGGTGATTTCCACAGCCCTTTCTTTAATTTTCCTCAATTATTCAACAAAACCCCTTTCAGTGCCTCACACAGCTCCATCCCCAGGGTATTGGGGCTCAGGGGATACCAGGAGGGATCCCCTGTTTTCCCGTGGCTGATTTCTTTTCCGAGGCCGTTGTAGGTGTATTGGTACAGATCGGCACAGACCCGCAGCCGTACATCGTATCGGCTCAACAGGAGGGTAGTCCGGGTACCGGTCAGGACCGTGCCTTTTTTCACCCATTTGTTCCACAGGGTCAGGATCCCGGTCTTTTCGTCGTACTGGATGCTCCGGGTATCGTAATAGACTTCATAATTGCTGTTGGCGCCGGCCAGGGTCCAGGCGGCCGTTTCGTCGGTGGGCGGCACTGGGGGCTGTTCTGCTGGAGCTGCTGGGGCTGCTGTGGAGTCGGCT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAAGACCATATGAATTTCTACTTTCGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2030825-2026622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWK010000004.1 Acidaminococcus massiliensis isolate MGYG-HGUT-01556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2030824 31 100.0 36 ............................... ACCCGATGATCTTGGATCTCTTCCTGAAAAAGATAA 2030757 31 100.0 34 ............................... TAGCCCGGTCGGTTTCAAGGGCCGTGCCGTACTG 2030692 31 100.0 34 ............................... TCCCTGCCCGATGACAAAAGCGACAACCGGATCC 2030627 31 100.0 34 ............................... CGCCGGGTCCCGGCCCTGGTCCACATTTCAATCC 2030562 31 100.0 35 ............................... TTTGGTTTGTTTTTGCTTAATATTGTTTTTGTATT 2030496 31 100.0 35 ............................... TACCCCGGGTGTTCCGCCAGCTGGAAACCATGCCC 2030430 31 100.0 33 ............................... ACTCCGGACTCTACCAACCTCCAGGATGCCAAG 2030366 31 100.0 33 ............................... GATGATAATATCGTGACCAATAAGATGCTGCAG 2030302 31 100.0 35 ............................... GAGAACTTAACCTGGAAAAAGCACAGCAAGTGATA 2030236 31 100.0 33 ............................... CCCTCTGCCTTACATCTTGCCATCCATTCTTCA 2030172 31 100.0 34 ............................... ATAGTTTTCTTGATCCTGACGCCCTATGCGGTAG 2030107 31 100.0 34 ............................... AGCGAAACACTGAATCATACCTGGAAGCGCAATA 2030042 31 100.0 34 ............................... GAATTTGTTCGTAAGCAAAAAGCGCAAGATCAAT 2029977 31 100.0 33 ............................... ATAAAAGTATTGATTGCAGTTGGAGTCTTAACC 2029913 31 100.0 34 ............................... ATCATATACTATACTTAGCATTTTGTCAAGTGCA 2029848 31 100.0 33 ............................... TTACACCATCAGCTCTGTAATTTGGGACTGACG 2029784 31 100.0 34 ............................... CGGCACACCCACGCGTCACTACTGGCCGAGGCGG 2029719 31 100.0 35 ............................... CGCCCCCGTGTTGGTGCTGGTAGCCAGGAATCCCG 2029653 31 100.0 35 ............................... TATGCAGGTCATTGAATATGCACAGAATGAGATTG 2029587 31 100.0 36 ............................... AATTTTACAATAAGGAGCCGAAGTCTTAAATCCTAG 2029520 31 100.0 35 ............................... GCCTACATCCACTGTAATACTCGCCTCCCCCTGAA 2029454 31 100.0 34 ............................... TTCCGGCGAATACTCTATAGGTCCCAAAAGGAAG 2029389 31 100.0 35 ............................... GCCGAGGAGCATCGGGATCCGGAAGATGATGAAGG 2029323 31 100.0 35 ............................... GTATTATGAAGAACTGTATGACAATGATTCGTACG 2029257 31 100.0 33 ............................... TCAATGTAACTGTATACGTCCAAAACGTCAATA 2029193 31 100.0 34 ............................... TGGATATGCTGACACGGAAAAATTTATTGAGGGA 2029128 31 100.0 33 ............................... CAGTTACAAAAAAAGAAAAGAGGTAAATAAAAA 2029064 31 100.0 34 ............................... CGCCGGAGCCGCTCACCAGGCCGCCGCTGGCAAA 2028999 31 100.0 34 ............................... TGCCGGTTTTGTAGTCGCATTGAGCACACCTTGG 2028934 31 100.0 34 ............................... TACTCCTTATGCCCCGGTGGTTACTTCGGAGATT 2028869 31 100.0 33 ............................... CGGATGTTGTCCGGCCAGTCAAAGCCAGATTCG 2028805 31 100.0 34 ............................... ACTCTTGATGGGAGCGCCTTCCGGAGCGGAGGGG 2028740 31 100.0 34 ............................... CTGCCTGGTAGCAGCAACACAATGTTACTCCAAC 2028675 31 100.0 34 ............................... TTCCTTGGCTGTGACCATGGGGAGCGCTCTCCTG 2028610 31 100.0 33 ............................... GTAGCTCGTCCAACATCCTAAAATACCAGTCAG 2028546 31 100.0 33 ............................... CCTTTGGACAAGATGGAATCTGCTCATAAGCAA 2028482 31 100.0 34 ............................... CGCTGTTTGGGCCTGCCCGTGTTAAAACAATCTG 2028417 31 100.0 35 ............................... AGGCTACCGTGAGGGGAAGATCTACTGCACGGCAA 2028351 31 100.0 32 ............................... ATGACTGGCGAAAGCTGCTCAGATGGGCCGAG 2028288 31 100.0 34 ............................... GTGGACCAGGGCCGGGACCCGGCGGGGGAGGTCC 2028223 31 100.0 33 ............................... CCGGAACGAAAATAATCAAATCATGGGAACCTG 2028159 31 100.0 35 ............................... TGTTGATAACAATTATCATTTGCGTACTAGCAATC 2028093 31 93.5 34 ...........AT.................. GAGAATCTACTATTGCGACAATACAGGCAGTGAC 2028028 31 93.5 33 ...........AT.................. TGCCCCTCGCAAGAAGCTGAACACCGTGGATAG 2027964 31 93.5 33 ...........AT.................. AACTACAAATCTCCGGACATCAGCGGTCCTGCC 2027900 31 93.5 33 ...........AT.................. TGGTCCATGAGGTAGATGGGCATTTTGCCGATG 2027836 31 93.5 34 ...........AT.................. TGGCCTCGTTGGGGCTGTAGATCCCGGAGGCCAC 2027771 31 93.5 35 ...........AT.................. TACAGCCCGGGAGTGGGGAGCCGTAGACACGACTT 2027705 31 93.5 35 ...........AT.................. TGCTGCCGTAGATCCGGCAGAGCCAAAAAGACCGC 2027639 31 93.5 35 ...........AT.................. TGCTGCCGTAGATCCGGCAGAGCCAAAAAGACCGC 2027573 31 93.5 34 ...........AT.................. CGGCAAAAGACGTTGCAGCCATCAAAGAGCACAG 2027508 31 93.5 36 ...........AT.................. TGCTGCCGTAGATCCGGCAGAGCCAAAAAGACCGCC 2027441 31 93.5 35 ...........AT.................. AAGCCAAACCATTTTTCCACCAGCCCCAAACGGCA 2027375 31 93.5 36 ...........AT.................. TGTAATCCCTAGCCAGGTGTCCAGGGCTTCCTCACC 2027308 31 93.5 33 ...........AT.................. ATTGCAAATATGGCAAAAACCCGCCACATCGCA 2027244 31 93.5 34 ...........AT.................. CATGTCCTCATGAAATTCAGCAGCGTAAAAAATC 2027179 31 93.5 36 ...........AT.................. TCCGGTATTCCGGTTAAGAAGATGGATTGCATGACC 2027112 31 93.5 34 ...........AT.................. TCCGGATCAGAGACGAGGTGCCTTATACTGCCGA 2027047 31 93.5 34 ..........T..A................. ATCCTGATTACAAATCCTTTGCTCATGTCCGCAC 2026982 31 96.8 35 ..........T.................... GATGGCCACTTGCTGCCGGTCAAAAAATGCCACTG 2026916 31 96.8 34 ..........T.................... CATCCTCACGGCGATAGCCGTCCGACCATCCGGG 2026851 31 90.3 36 ..........TAT.................. CAGGGGCGCGCCCGCTGCTGCATATCCCAGCATGGG 2026784 31 93.5 35 ...........AT.................. AATAGGGGGCGATACACCACCTGCTGGGGTTGACT 2026718 31 96.8 35 ..........T.................... ATTGCCACCCTGGACAACCGTACAACGCCGATTTG 2026652 31 87.1 0 .........A.AT....A............. | ========== ====== ====== ====== =============================== ==================================== ================== 65 31 97.7 34 GTCGCCCCCGCGAGGGGGCGTGGATTGAAAT # Left flank : TTTTCCCCTACGTCCAGGCCCTGCTCCTGGCCAAATGGCTGAGAGAGGATCTGGATGGGTATCCGGCATTTTTGGGGAAGTGAAGCAATGTTGATCTTGGTAACCTACGATGTAAACACCGAAACCCCGGCCGGGAGAGCCCGGCTGCGGAAAGTGGCCAAATGCTGTGTGGCCCACGGACAGCGGGTGCAGAATTCCGTATTCGAATGCCTGTTGGACCAGGCCCAGTTCGTCCTGTTGAAAGGAGAACTGGAAGCCCTCATCGACAAAGACCACGACAGCCTGCGGTTCTACAACCTGGGCAACACCTATCAGAACAAAATCCAGCACCTGGGAGCCAAAAGGACTTACGACCCTGAAGCCCCCATGGTGCTGTAAGCGCGAAGGGGAAGCAAACAGAAAGAAAAAGCACCGGATAACGGGGCTTAGGAAATCTGAAAACTGACCTTCGCGAAAAAAAGACGGGAACGTCAGATGGAATCTGACTGCCTCGTCTGACA # Right flank : ATCAGGCCCATCTGGGCCTGGACGGCCTGCTTGGTGTCGCCCCCGCATGGGGGCATCGGCGTCAGCCGATATTTTGCAGGACCGGCCGAAAACGATGGAGTGTTCGGCAGAAGTAGGAATATGATGATTGCAGTATCCATTGCTGTATCTCAGGTGGATAGTTCCCGTACCTTCGTCAAGATATTTGGTCCTTTTAGGAACTCATACCTCCACCACCGGGCAAGCTCGGTCCTTAGCTACGGTATAAGCGACCTCGCTATCCGCTTGAAGTGGATGCTCTCTGCTTACACCCCTGCAGGGCGGAATTGGCCTCTGGCTATGCTGGTACACTTTGCGGATATACGTCGATACCCCGGGAGCCAGGAGGTGCGGGGGTCAGGTCAATACGGGTATAGGAGGACTTTTCCCATCTGGGAGGCCGGGACGGGTTTGCCAGCGGCGAACCCCCACGCCGTCGACCTCGAAGCAGCGATGAAAAATTTTTGACCCCATTTCTGAAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGAGGGGGCGTGGATTGAAAT # Alternate repeat : GTCGCCCCCGCATGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 2521888-2520420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWK010000004.1 Acidaminococcus massiliensis isolate MGYG-HGUT-01556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2521887 28 100.0 32 ............................ GAGTCTGAAACTCTTCCCCAGCTTCGAGCACG 2521827 28 100.0 32 ............................ CATCCGGTTCAACATGGCCAGCGGGATACCAA 2521767 28 100.0 32 ............................ TGGAAGAAATGCATTGTCTTGCACGTGGGTAC 2521707 28 100.0 32 ............................ ATGAACCCATCGAGCGGGGACAACAAGATGGA 2521647 28 100.0 32 ............................ TTGAGCGCTGTCGGAACCACTACGGCAATGCC 2521587 28 100.0 32 ............................ TTAGACTGATTCACAACAGCGCACAGATGATT 2521527 28 100.0 32 ............................ ACCTGTGTCGACTTTATAAAAACGATATATTC 2521467 28 100.0 32 ............................ TGATTAACAAATCTTCTTCCCGATCTACCCTC 2521407 28 100.0 32 ............................ TGCTGGCACGGACCAACGGCCTCAAGGCATCT 2521347 28 100.0 32 ............................ ACGTAGCCGTTCTGGTCCTTGCAAATATCTCC 2521287 28 100.0 32 ............................ ATTGCTTTCGTCACGGTAGTACGCTCCAAATC 2521227 28 100.0 32 ............................ TCACAGTCCAGATAATGATTCTCTGCATGTGC 2521167 28 100.0 32 ............................ CAAAACGAAAAGATGTGGGTCAAGAGCAATGG 2521107 28 100.0 32 ............................ ATTCCCATAGAGTCAACTACAGCCTTGGTAAA 2521047 28 100.0 32 ............................ ATGTAGCGATAGCGCTCCGTTTTCAGTGCCTT 2520987 28 100.0 32 ............................ GACGACTGGCCAGCCAGCCACAAAACAGGTGG 2520927 28 100.0 32 ............................ TTTGGAGGAAGGAAAGGTGAAGCTGCTGACGT 2520867 28 100.0 32 ............................ ATACTCGATTGTACCGAGCGCAAGAACGTGGG 2520807 28 100.0 32 ............................ TCCACTACTTCCGCCAGCCCCGGCAACTTCTA 2520747 28 96.4 32 ..........A................. ATGGGAGAAGCGGGCTTTCCAGATAAGCCATA 2520687 28 100.0 32 ............................ TGTATCCGTCTTTTTTCGTTGCGGTACGGCAT 2520627 28 100.0 32 ............................ CGAAGCAGTCCCCAGAGATTGCTAAATGGGGC 2520567 28 100.0 32 ............................ CGAAGCAGTCCCCAGAGATTGCTAAATGGGGC 2520507 28 100.0 32 ............................ TATAGGTGGCTCCAAAGACAGTCAAATAGATT 2520447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.9 32 GCTTACTACCGTGAAGGTAGCTTAGAAA # Left flank : ATGCTGGAAGCACTGCAGCTGGACAGAGTGCTGAATCGAATGCGGGATTACGTACACATTGTTTCTGTGCGGAAAATCCCTGTAAGACGGCTTACCGGGTATGCGATATACAGTCGGTATCAGCCTGATGCATCTGTTGAGCAAAAAGCGAGAAGGTATGCCAAAAGACATCCGGAATCTTCCTATGAAGAAGCTCTGGAATTTATGAAACAGAGGACAGAAAAATATCAACTACCCTTCATCCAGATTAAAAGTTTATCCAATGGACAGTTCTTTCCCTTGTTTATCCGGAAAAAGACTGTTGAAGAAGAATCCAACAATGGATTTGGAACCTATGGCCTCAGTGCCAAATCCTCAGTCCCAGAATTTTAACCCAATTTTCATAATGGATCCGCAGGCCTTGTATTAAGCGGGCCTGTGGAAATCCGAAATAAATTGGGTAAAAAAGAAATTCTGCCTCAAACCGAGGAAAATACGAATGGTTTTGTGGATGCAGAACA # Right flank : TGGCCATGGGCGGAAAGGCTCTTTATACGAGGGGTTCGCAACCGATCCACAGCTCCATTCTAATCGTACCGTAATTCACTATAAAAGGGAATATCTGGTACAACTCTATTATACGATGGGTTCGCCGAAGGCAAACCCATCCCGGCCGCCGGTCGGGCCTGATAAGAATTCAGAAACGGCTCTGACGGGCCTTGAGACATCAGATGTCAGCTTTGTTCGGCGTAGCAGCAGGGACCTTCTGCTTATCGCCAACAAGCTGGCATCTGACTTCTGACAGGCCCGAAGGGCCGGGTCTGGCTTCTGTTGTCTTTCTATACAAAAAGCCGCCACCCGAAGGTGACGGCTGTCCTTTTTAAAATATGGTCGGGGCGACAGGATTCGAACCTGCGGCCTCTTAGTCCCGAACCAAGCGCGCTACCAAACTGCGCTACGCCCCGACAACACAAATAGATTATAGAGGTTCAGTTGGCTTTTGTCAACTGTTCTTTGCCAAATTCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTACTACCGTGAAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //