Array 1 111924-112268 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTU01000029.1 Bifidobacterium longum subsp. longum strain MCC10120 contig0029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 111924 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 111990 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [111996] 112074 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 112134 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [112182] 112182 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 112239 27 81.5 0 C.............C.....C....CG | GC,C [112256,112260] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 156-1411 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTU01000055.1 Bifidobacterium longum subsp. longum strain MCC10120 contig0055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 156 36 100.0 28 .................................... AGATAATTGTTTACGCTGTTGATATTGA 220 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 284 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 348 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 413 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 478 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 542 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 606 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 670 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 734 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 798 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 862 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 926 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 990 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 1054 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 1119 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 1183 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 1247 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 1312 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 20 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GACCTGGCGTTCCTCTTCCGACAGGTGCGAATATACTTCTCCCATAGGTGCGACATCCCTTCGGACTGGTTTTCTAGGCAATTTCCAATCTAACGGGTGTTGCACTTTCATTTAGACAACGGGCAGCGGCTATTCCGGCTCCATGCCGTCCGAGGC # Right flank : CCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATTGGAAATTGCCTAGAAAACCAGTCCGAAGGGATGTCGCACCTATGGGAGAAGTATATTCGCACCTGTCGGAAGAGGAACGCCAGGTCATCCAGATCGAGGTAGGCAACGGCGCCAGCATACGCGGGATCGGCGCGATGCTGGGCCGCAGCCCGTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 524-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTU01000061.1 Bifidobacterium longum subsp. longum strain MCC10120 contig0061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 523 36 100.0 28 .................................... ATAGTGTTCAATGGGTCATATTTCAACG 459 36 100.0 29 .................................... CGCCGGTCAGTCGGTCGAACCATGCGTCA 394 36 100.0 29 .................................... CTCCAACGCGCTTACGAACGATTGCGGGG 329 36 100.0 28 .................................... GCCGATTGAGGAGGAGTTGGGGCCTCTG 265 36 100.0 29 .................................... TTGGAGACATGGCTGGAGACTTCGGAGGA 200 36 100.0 28 .................................... AAGTGCCATGAGGGATTAACAGACGAAA 136 36 100.0 28 .................................... TTTTGCTTGCGCATGTTTCACCTCCCTA 72 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 100.0 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //