Array 1 329253-329403 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895334.1 Chitiniphilus shinanonensis DSM 23277 C556DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 329253 29 100.0 32 ............................. TCCTTGCTGGTCTCTTCGGCGTTGAGCTTGGC 329314 29 93.1 32 G.......................G.... TCGCGGCGCAAGGGCACACCTTCCGGCAGACC 329375 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 TTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CAAGCTGTTGGGCCGCATCATTCCCACCATCGAGGACGTGCTTGCCGCTGGCGGCATCGCCCCGCCCGAAGCGCCGCCAGAGGCCGTGCCGCCCGCCATTCCCAACGCCGAGGGCATCGGCGATGCCGGCCACCGGAGCCCGGGTTGAGCTTCGTCGTCGTAGTCACCGAGAACGTCCCGCCGCGCCTGCGCGGGCGCATGGCGATCTGGCTGCTGGAGGTGCGCGCCGGGGTGTACATCGGCGACGTCTCCCGCCGCACCCGCGAAATGATCTGGGAACACCTGGCCGCCGGCTACGAAGAGGGCAACGTGGTGATGGCCTGGGCCAGCCGCCACGAATCCGGCTACGAATTCCAGACCCTGGGCGCCAGCCGCCGGCTGGCGGTGGAGTTCGATGGGTTGAACCTAGTGGCGTTCCAGCCGTTGCCTGTGGAGGAATAGTGTCTGGTGGATTGAAGGGGTGGAATATTTGTAAACTTTTTCAATGAGTTGTGATTGGT # Right flank : GCCACACAAACGGCAAAGGAACTAGCTCTCTCATCTGAACCGCCCGGCCAGTCGAGCGAGGTCACGCTCGCAGTCGGCCTGATTGCCTTCACCTCCCTGTCAATTCCCCATCGGAATTCCCGATGGTGCTATCGCGTTTTTCCGTTTCGCTTCTTCCGCCAAGCCAGCGATGCTGGATCACGGCAATCCAACCAACGGAACGGAAAACATGGCGAAGACGCAAGCGGGAAAATCAACGGTGCTGATCGTGGGCGGCAGTTCCGGGATGGGGCTGGCGCTGGCGCGGCGATGTCTGGATGCGGGTGCACGGGTCGTCATTGCGGGGCGCAACGCCGACAAGCTCGCCGCCGCGCAGGATCGACTGCAAAGGCCCACGCAGCTTCAGGCCATCGCGGTCGATATTTCATGGGAAGACCAGGTGGCCCGATTGTTTGAACAGGTAGGTCCGGTGGACCACGTCGTCAGCACGGCGGCCGATATTGCCGGTGCTTATCAACTGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40134-41750 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895346.1 Chitiniphilus shinanonensis DSM 23277 C556DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40134 29 100.0 32 ............................. CCCCCAGGCAGATTGAGCTGGAGTTTATCGAT 40195 29 100.0 32 ............................. TGTACGTCTGATGCAAAAAACACTTATCCATC 40256 29 100.0 33 ............................. AATTACCGGGAGTATGCGACGAATTCGCGGTAA 40318 29 100.0 32 ............................. TTTTGCGGGATGGCCACCATCACGATGCCGGA 40379 29 100.0 32 ............................. CGATCAAGGTGTGAGCTATCGGCAATATTTAA 40440 29 100.0 32 ............................. AATCGCGAATATCTCGGGCGGTATCGCTGAGA 40501 29 100.0 32 ............................. AAGGACGGCGGGCCAACGCCTACCCCTGGCGG 40562 29 100.0 32 ............................. TAGCCACTGGAGACGTCCGCCACGACCAGCCA 40623 29 100.0 32 ............................. ACACGAGGGATGCCGGCAATTGGCAAATAAAT 40684 29 100.0 32 ............................. GCAACTGGATCGATGCGAAACGATGGGCCACA 40745 29 96.6 32 ............................T TCATGGCGCACGCCGATCCGGCGATTGCCCAG 40806 29 100.0 32 ............................. CGACGCCAGTTTAGGCACTTCGGGCAGGGGGG 40867 29 100.0 32 ............................. GTGGTCTTGCCGGCTCCGGATGCGCCTAGGGA 40928 29 100.0 32 ............................. GCCGTTGTTGCGGTCTTTTCTGCATTACAAAA 40989 29 100.0 33 ............................. TATCATCCCGTGCACAGAACGACGCACTTACAC 41051 29 100.0 32 ............................. TTCAAGATCAAGAACAAGAAGCTCAAAAGCAA 41112 29 100.0 32 ............................. ATTGACGCTCCAGTCATAACGCTTAATTGAGC 41173 29 100.0 32 ............................. ATAGAAAATACATTATTGAATTGCTGAGTGTT 41234 29 96.6 32 ............................T TCGGCGAATGCGCCCATGATTTGCAGGATCAT 41295 29 100.0 32 ............................. CCATCCTGGGAGAGATCGAGGCGGCGAGATCC 41356 29 100.0 32 ............................. ACCTCGGTGAGAGACCTAAATCCGGCGTTGCG 41417 29 100.0 32 ............................. TGGCAACGCAAACTTGCCGAGAACCACTCCAA 41478 29 100.0 32 ............................. CCCGTATTCCTCTCAAGATTTTGGTTTTGCCG 41539 29 100.0 32 ............................. TCCAGCAGCGGCCGTTCGTCTCGGCCTGCGTC 41600 29 100.0 32 ............................. AAAACAACGTGTTCGGCGAGCGCTGCCCACGT 41661 29 100.0 32 ............................. GACACATCATGCGTGTTACCTGCATTGGCATC 41722 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATGAACCG # Left flank : TCGCCGGCCTGTTGCTGGCGGGCCAGGCCGGGGCCGAAGTCTACAAATGCCTGAAGGACGGCCAGGTGATCTACGCCGACCGCCCTTGCGACGGCAAGCGGCTGGACTACACCGGTGGTGCCGTCTCCAGCGCCGACGCCTTCCCCGTCCCCGATCCCACCCAGGCGCCGCCGCCTACCCCCGAGCCCATCGCCAGCAACGAACCCGCCGACCCCGGCGAGCCGGCCCGCATCGACCCCGACCAGCGCGCCACCGACCTGTGCAGCGTGGACAACCCCAACCGCGACACGGTGTTCTGCTCCCCCGACAACCTGCGTCGCCTCTACGACTGGCGCGCCCGCCCCCGGCCACCACAGCCGGCAGGCGGGGGGATCCGGTTGCGGAAGTGAGTGGGTGTGGAGGCTGGACGAAGACTACGACAGAGGCGCGGCTGCGCCCGTAAGGTTGGTGGTTTTCAGCAGATGGTTTTTTGACTGGGGAATCAATGTGTTGTAAATGGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGAGAGCGGGGATGAACCGGACACATCATGCGTGTTACCTGCATTGGCATCGTGTTCCCCGCGAGAGCGGGGATGAACCGTGAAACATTCGCTCTTCCCAGCCCGGTTTAGCGTGTTCCCCGCGAGAGCGGGGATGAACCGCCGAACCAGTGGGAGGGCGGCCCACAGTGGAAGTGTTCCCCGCGAGAGCGGGGATGAACCGTAGCAAGGTTCCGCAAGGGCGATCACGTCCAAGTGTTCCCCGCGAGAGCGGGGATGAACCGTATCCACGGCGCTTGTTTGGTCAGTATCGCTCGTGTTCCCCGCGAGAGCGGGGATGAACCGTTGAGCACGAACTCAGGCTAGAGGCGAAAGGTGTGTTCCCCGCGAGAGCGGGGATGAACCGCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41851-42489 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895346.1 Chitiniphilus shinanonensis DSM 23277 C556DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41851 29 100.0 32 ............................. GACACATCATGCGTGTTACCTGCATTGGCATC 41912 29 100.0 32 ............................. TGAAACATTCGCTCTTCCCAGCCCGGTTTAGC 41973 29 100.0 32 ............................. CCGAACCAGTGGGAGGGCGGCCCACAGTGGAA 42034 29 100.0 32 ............................. TAGCAAGGTTCCGCAAGGGCGATCACGTCCAA 42095 29 100.0 32 ............................. TATCCACGGCGCTTGTTTGGTCAGTATCGCTC 42156 29 100.0 32 ............................. TTGAGCACGAACTCAGGCTAGAGGCGAAAGGT 42217 29 100.0 32 ............................. CGCTCGTGCCTTCCACAGTTGGGGGTTCATTG 42278 29 100.0 32 ............................. AATTGCATTGCACCCATGGCTCAGTTCTCCGC 42339 29 100.0 32 ............................. AAGGTCGGCTTCGCTCTTGCCAAGCTTTTCAA 42400 29 100.0 32 ............................. CCGGGTACTACGTGTTTGACCCCATCGTGGAC 42461 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATGAACCG # Left flank : GATCCGTGTTCCCCGCGAGAGCGGGGATGAACCGACCTCGGTGAGAGACCTAAATCCGGCGTTGCGGTGTTCCCCGCGAGAGCGGGGATGAACCGTGGCAACGCAAACTTGCCGAGAACCACTCCAAGTGTTCCCCGCGAGAGCGGGGATGAACCGCCCGTATTCCTCTCAAGATTTTGGTTTTGCCGGTGTTCCCCGCGAGAGCGGGGATGAACCGTCCAGCAGCGGCCGTTCGTCTCGGCCTGCGTCGTGTTCCCCGCGAGAGCGGGGATGAACCGAAAACAACGTGTTCGGCGAGCGCTGCCCACGTGTGTTCCCCGCGAGAGCGGGGATGAACCGGACACATCATGCGTGTTACCTGCATTGGCATCGTGTTCCCCGCGAGAGCGGGGATGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43092-44527 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895346.1 Chitiniphilus shinanonensis DSM 23277 C556DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43092 29 100.0 32 ............................. ACCAGCGCCTCAAAGGCAAGGTGCGTCTGGCC 43153 29 100.0 32 ............................. GTCAAGATCAGCGGCGGCTACAACGCCGAGGA 43214 29 100.0 32 ............................. GCGGTGGGCAAGACGCGCCAGCACGTGGACCA 43275 29 100.0 33 ............................. CAGCGAGGCCCCGCCGTCGCGCGCCAGTTGATC 43337 29 100.0 32 ............................. CTCATGCAAATCAGTCCGGATGGTGAATTACG 43398 29 100.0 32 ............................. TGGCCGTGGCCACGGCGCCGGACGGTGCGTCG C [43407] 43460 29 100.0 32 ............................. GGGCCGCCATGCACCTACGCGAACTGGTGACC 43521 29 100.0 32 ............................. CTCACAGTACGCCAGCTGTACTACCAAATGGT 43582 29 96.6 32 ............................A TCACCGTCCGAGACCTGATCGACGACGCCGAG 43643 29 100.0 32 ............................. TCATCGAGCAATTCGGCATTCCGTCCGATCTG 43704 29 100.0 32 ............................. AAGTGGGCAAATAGCACGCCCAGGCCGATCCA 43765 29 100.0 32 ............................. AAAAATACGAAAAATCTACTTTTTTTATTGCA 43826 29 100.0 32 ............................. AAGTGGGCAAATAGCACGCCCAGGCCGATCCA 43887 29 100.0 32 ............................. AAAAATACGAAAAATCTACTTTTTTTATTGCA 43948 29 100.0 32 ............................. GTGCAGCTGTTGGTCGTCGTGATTGGCACCGT 44009 29 100.0 32 ............................. GGTCTCGACGCGGTCCAGTTCACCGTCCGCAT 44070 29 100.0 32 ............................. CACGGAAAGATCACTTTCATGTGCCGCAGCGG 44131 29 100.0 32 ............................. CAGCTTCTTGAACCCGTCCTCCAGCTCGAAAA 44192 29 96.6 32 ...........C................. TCTCACTTCGCATACCGCTGAAACATATCCTT 44253 29 100.0 32 ............................. AGGGCATTGCCCTTAACTACATGCCCTACATC 44314 29 100.0 32 ............................. CCCCCCAGCATGCCGGCCACGTCCACGGCGGC 44375 29 100.0 33 ............................. TACCTGTTGTTGAACAACTGGATTTCGCCCCGC 44437 29 96.6 32 ........T.................... GTGCGCCTCGCGGAGATCGACGCACCCGAGAA 44498 29 82.8 0 ........T....A.......C.A....A | A [44521] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGAGAGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGAGGATCGCTATGCCGGCTCACCTGCTGGCCGTTTCCCCCGCAATAGCAGATTCGCCCTTCAGCCCACTCGCAGCCCTACGTCCTTCATTTCGCCTCCCCCAAACCAGCCAGCAACAACTCCCCGACCCAACTCCCCGCCCTACAACGCCGGATTCGGGCTGCGGGCGTGGATCGCTTCGATGGCCGTTTCCAGTTCCGGGGTGAGTGTCACGTCCAGGCTGGCCAGGTTTTCGTCGAGCTGCGCCATGCTGGTGGCGCCGAGGATCACGCTGCCGACGTACCAGCGGCTGTTCAGCCAGGCCAGCGCCAGCTGGGTCGGGGTCAGGCCGTGTTCGCGGGCCAGGGCGGCGTAGTCGGCGATGGCGGCCTGCACGTAGGGCTTGGCGTAGCGGGCGCCGAAGCCGGGGAAGCGCGTCATGCGGCCGTCGCTGGCCGGGTCGTCCTGGTACTTGGCGCTCAGCAGGCCGAACGCCAGCGGGCTGTAGGCCAGCAGCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4205-1915 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB895358.1 Chitiniphilus shinanonensis DSM 23277 C556DRAFT_scaffold00025.25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4204 29 96.6 32 G............................ CCAAAAATGGACTCCAGTCGCAGACTGATCGC 4143 29 96.6 32 G............................ CAGCTCGGCAACGCGCCGTGCGGTGCTCTCTC 4082 29 96.6 32 G............................ CGATATAGCCGGGGGGCATCCACTCACTCCGA 4021 29 100.0 32 ............................. ACCGATCCGGCGGCGGCCCTGACATGGCCGCT 3960 29 100.0 32 ............................. GCCCCGAGATCGGTGGTGAGCACGTCGAGCAG 3899 29 100.0 32 ............................. AAAGGGGCCGCGAGGCCCCTTTCTTCTTTGGT 3838 29 100.0 33 ............................. GTTGGCACGGGCAGGAACCAGTCCAAACAGGTC 3776 29 100.0 32 ............................. ATCTATATTGGCCTGATGGCCGTGATGCCAAT 3715 29 100.0 32 ............................. CTTGTTTGAAATCAGAAGTTAAATATTCATAT 3654 29 100.0 32 ............................. CGCCTTTCTTTGTCTTTCTTTATCGCCAGTTT 3593 29 100.0 32 ............................. TCGTTGATGGCAGCGTTGAACCGACTAAGAAC 3532 29 100.0 32 ............................. CGCCTTTCTTTGTCTTTCTTTATCGCCAGTTT 3471 29 100.0 32 ............................. TCGTTGATGGCAGCGTTGAACCGACTAAGAAC 3410 29 100.0 32 ............................. AGCTAATCCCACCGTCAATAACTCCTTTTACC 3349 29 100.0 32 ............................. ATTGACACTCCAGTCATAGCGCTTAATAGAGC 3288 29 100.0 32 ............................. GTATTGTGGAACCTATCGGTGTCGCCGTTGAA 3227 29 100.0 32 ............................. GCAGAGTTACGCGCCGTCGAGCAGACCGGCCT 3166 29 100.0 32 ............................. AAATCCGGCGGTCTATTGTCTCTCTTAGCGCA 3105 29 96.6 32 ............................T GCCGATGCTGGCCGAGGACGTGGTGATCCAGA 3044 29 100.0 32 ............................. CACTTTCCTGTTCGGGCGCCAGGGAACAAGGT 2983 29 100.0 32 ............................. TTATTTGATAAATACAAGTCGGCCACGCTGCA 2922 29 100.0 32 ............................. GCCAGCCAAGGGCCGGCCGTGGCATCTCTGGG 2861 29 100.0 32 ............................. GAGGCATAAGCATGGCGATTACGTGTTCAGCC 2800 29 100.0 32 ............................. ATGAGGGGCGGCCTGTTTACTACTTTGGCATC 2739 29 100.0 32 ............................. GCCACCGGCCAGCTCCAGGGCGGCCTGGCCGA 2678 29 100.0 32 ............................. ACCTCTTGCACCTTGAGCGTGCTGGCTTCGCC 2617 29 100.0 33 ............................. CAGCAGTTCCACCATCAGTTCCCGCGCGCGAAG 2555 29 100.0 32 ............................. GCGCCACCCAGCAGGCGCGCCTTCAACTGGAA 2494 29 100.0 32 ............................. CACTGCGGGCGTTAAACCTGATGACATCTTCG 2433 29 100.0 32 ............................. GCATGGGGGTGGGCGGGATGTTGAACACACGT 2372 29 100.0 32 ............................. GTCTCCAGAGGGGATCATTCCACCGGCTCGAT 2311 29 100.0 32 ............................. ATCGACCGCATCGCCCGATCCCTATCCGACCT 2250 29 100.0 32 ............................. ACTTCGCTGTTCATAGTCTTTCGTGCGCCGGT 2189 29 100.0 32 ............................. CAGCGTGGCTACAACTTCGCGGTGGAAACGGC 2128 29 100.0 33 ............................. CAACGGTGAGACGTTACCGCTGTCGAGACTGCG 2066 29 100.0 32 ............................. GGGCATCCTGCGGTCGCGGTGACCTGCGCCGA 2005 29 96.6 32 ...........................T. CGGTCCTTGTCGAATCCCTGAACTGCCCCGCC 1944 29 86.2 0 ............AA...T..C........ | C [1935] ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.2 32 CTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : TGCTGGTCGCCAGCCAGATCGCCAGCGGCGAGGAGAACGCCCTCAACCTGCGCGTGCACGGCACCCGCGCCGGCCTGCGCTTCAGCCAGGAATCGCCCAACGAACTGTGGTTCACCCCGCAAGGCGGCGAAACCACCCGCCTGACCCGAGGCCGCATCGACAGCCCCGCCGCCGCCCACGCCACCCGCATCCCCCCCGGCCACCCCGAGGGCTACCTCGAAGCCTTCGCCCAGTTGTATCGGGATGCGGCATTGCAGATCGTCGCCCAACAGACCAACACCCCGGCGCCCCCCGAATCGCTGATGCTGACGACGGTGGACGACGGGGTGGCGGGGTTGCGGTTCATCGAGGCGATGCTGGAGAGCCAGGCAAGGCAGGGGGCTTGGGTCGGGGTGTAGCGGTGGTGCAGCGGCCCGGCGCGTGGTTGGGAAAGTACTTGTAAGGTTGGTGGCTTTTGCCTGCGCGGATTTCGATTGAGGAATCAGTGTGTTGTAATTGGA # Right flank : ATCTGTGCGATGTATCGCCCACGTTTCCTGCGAAAGATCGATCCTGGTATGACGTCCAGCAGCCATCGTGGCAATATCGAACGTTCGTTCTGAATGCGGTCAACAAACCCTCTTGTCACGCCACGCAGGTGGATCGGCTCCGCTGATCACCTGGTCCTGCCTGCGTTCCGCGTTTCTTGTGGGTGACTTTGTTGGCATTCTTGATTTCCGTTTTGGAGAAGCCATGCAGCCACGCCTGAATCTGATTTTGCTCGGGGTCGACGATATCGCGCGCAGCGCGGCTTTTTATGCGGCGTTGGGCTGGCGGGCGGCGCCGAGTTCGCACGCGGGGTTTATCAAGATCGACCTCGGGGGCGTGGTGCTGGGGCTGATTTCGCGGCGCGATCTGGCTGCTGATGCCGGCGAGGTGGCGTCGCTGCCGTCCCAGGCCGCGCACAGCGCGCTGGTGTATCTGGCCCGCCGGCCGGAGGAGGTGGCCGAGGCGCTGGCGCTGGTGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //