Array 1 595743-594038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000001.1 Desertifilum sp. FACHB-868 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 595742 37 97.3 34 ....................................T ATTTTTGCGATGACTGTGGCGCTGAATACGAAGG 595671 37 100.0 45 ..................................... TTGACAGTCACGTCGTCCCGGTGCGGGTCGCCCCAAGGAAAAAAA 595589 37 100.0 38 ..................................... TTGACAGTCACAGTGACTTCAATGAAACGCCTCCTAGT 595514 37 100.0 42 ..................................... TTGCAGATGTCCCGGTAGGTGAGCCGATTCCGGGGCGGACCC 595435 37 100.0 40 ..................................... GCTGCCAGTGGCCCTGGCAAAATTTTTCAACCTATTGGAG 595358 37 100.0 33 ..................................... GCTCCTGAGAAGAAGAATAAAATAGATTGCTAT 595288 37 100.0 36 ..................................... TGAATTAGTGGCCGCCGCCGATTTATTCAACCAATC 595215 37 100.0 35 ..................................... GATGGACCTTTTAGCCTTCCCTACGAGGTTTCTAG 595143 37 100.0 34 ..................................... CTCGTTCTGCTGCGGCGGCCTCAGCCCTCGGCTC 595072 37 100.0 34 ..................................... TGTTGCCAGCATCCCTCCTGTGAGGAATCGGGCT 595001 37 100.0 34 ..................................... CTTTTGTGGAGACCCACTGCGGTTTAGTCATAAT 594930 37 100.0 35 ..................................... TTGTGTTGCATGAATCCAGAATGCCCAGTAAGAGT 594858 37 100.0 33 ..................................... GCGGTATACCTGCCAGGGAGTGCGCCGCCCCTT 594788 37 100.0 34 ..................................... GGAACGCTATCGAAGAGTTCTGTCATATTTGCAA 594717 37 100.0 37 ..................................... ACGAAAAATTCATAGCAAGATTTTAATTAATGGACTT 594643 37 100.0 36 ..................................... TCACAAACTCGCCTCGATGAGCGATCGCGTAAACTG 594570 37 100.0 34 ..................................... AATTGGAAATTTCTGAGGATTCCATTATAGAAAT 594499 37 100.0 37 ..................................... ACAACCGAAAACCACGATTCTCTGAACAGACAATCGG 594425 37 100.0 34 ..................................... GCAAGAGGATATCGCTCACTCACTGCGCCAAACT 594354 37 97.3 34 ....................................T GAGTTGGGCGGCATAGGGGCGCGGATCGGCTTGA 594283 37 97.3 34 ....................................T TTGGAGTGCATCCGGGCTGCACTTCTGATCGAGC 594212 37 97.3 33 ....................................T TCCTTTTGAAAAAATGGCAGGTGCATCTGCCCC 594142 37 100.0 31 ..................................... GTACTACACTCACAAGGTGTAGCCCATTGAA 594074 37 91.9 0 .CAT................................. | ========== ====== ====== ====== ===================================== ============================================= ================== 24 37 99.2 36 GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Left flank : GCAGTTGGGTTTTCCCCAAGAGGCGATAGAGAAGGTGGAGGAACTTTCGGACGAACAGGGGCGAAAGTTAAGTCAGTTTGATGCGTTCCAATTTCAACGGCGTCGCACTCAAGGACAAGGTTCTAAAAGTTCGGATCGGGGATACTGGTTTCGGTTAACTTTTAAAGAACCCCAAAAAGGACCGATTGCTTTGGGCTATGCGGCTCATTTTGGTTTAGGGACGTTTATCCCAATCCGATAAATCGCTCTTGCTGCGCGGAGGGGTGGGTGTAGAATGAATGCTGCTCGACAATATGCCCCAAACCCTGGAATAATAAGGCTGTGGGCGATTTTACAGAAATTTTGCCTCGCGCAAATGCCAAAATGCTTATCTGATAAGCGTTTCGTCGTTTCTGTATTTTCTATTTTCGGGCGATTATTTCCCAAAATGGACTTCTCCCCCCCTCGCCGCGCAACCGTACCTGGAAAACTCCATATCATCAGGCTTTCAGGTTGCCGCA # Right flank : AAGCAAGCAAGGAAGCCAGGAGCGAACCCCCTAGATAGAGATATCCTAAAAAAGGCAGAGGTCAAACTTTGCCTTTTTCCGTTTGGGGATAGACTTGTGCAACCCGTAGACTTTACCACCCTCACCGCCGTTTACACAGACTTGCAGGCGAACTGGCTGCCCGCCCGTCTCGAACAAGTTTATCAGCGCGATCGCCATACCATCTGCCTTGCCCTGCGAACCTTTAAACAGCGCGGCTGGCTGACCATTTCGCGCCATCCCCAAGCCGCCCATCTGTGCATCGGCGATCCGCCCCCCAAAGCGCCCGACACCTTCACCTTTAGCGATCAACTGCGCCACCAACTCAACGGGTTAGCCCTGGTTGCCATTACCCCCGTTGCTCCGTGGGAACGCGCCCTAGACCTGCAATTTGCCAAACGCCCCGGAGACGCCATCCTCTGGCATTTGTACGTTGAAATTATGGGCAAATATAGTAATATCATCTTGGCAAATGCCGATAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 383624-386080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000002.1 Desertifilum sp. FACHB-868 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 383624 37 100.0 38 ..................................... GGCAAAATTTGAAGAGACGAAACGCGATCGTGCTTTTC 383699 37 100.0 36 ..................................... TATAGCGGCAGATGCTGAAGCCGGACAGATTATAAG 383772 37 100.0 35 ..................................... CATTGCTCAGTACGATACCCAATGCCATCCTTACT 383844 37 100.0 36 ..................................... GCATCAATGGCTGCTGAAGGAAGCCTTGGGTATAAC 383917 37 100.0 38 ..................................... GTTGCTAGGGATTCAGTGGACCGCTTGTCCAACCACTC 383992 37 100.0 33 ..................................... AAAAGTGATGTGCCAATCTCAAGCAACATTAGC 384062 37 100.0 35 ..................................... AGGCAACTGCTATGGCAACACGCAGCACCAACAAT 384134 37 100.0 38 ..................................... GCTAGAGCCTCTAAGCAGCTCAGCCGTAGAAGAATTTT 384209 37 100.0 35 ..................................... GGAATAGATCCGATCGCGCTTCCTATTTTGGTGAA 384281 37 100.0 39 ..................................... TATCAATATCATCAACAAAGCCAAACTCAAGCTTGGAAG 384357 37 100.0 36 ..................................... CGCCAAGTGCGATCGCTCCGTCATTAACATCCTCAA 384430 37 100.0 35 ..................................... GCTGCACAATCTGATGGCGTAGAGGCAGTATTGAG 384502 37 100.0 33 ..................................... AATTTCAAACAATTGGGAGTTAGACGTTGGTGT 384572 37 100.0 35 ..................................... GAAAAAAAATAGCCTCCATGAGATTTCAGGAAAGC 384644 37 100.0 35 ..................................... CCGGGCTTCAAAATGATATCTTCCACTCCATTGCA 384716 37 100.0 42 ..................................... AGGAGGAATTTATCGATAAAAATAATCCTTCGGCTGAGAAAA 384795 37 100.0 36 ..................................... ACAACACTGTGATGAAGATAAAGCTTTTGCTTAGAG 384868 37 100.0 47 ..................................... ATGAGTGCAGCCGACTTTTCCGTCCCGGAGATTGAGCGGAACCGGGC 384952 37 100.0 39 ..................................... AATACTATCTTGCAGAAGGTCGTCCAGTCCCTCCACAAT 385028 37 100.0 36 ..................................... TCAAGACTCCAAGAATTAATTTATAGAAGATTAGCA 385101 37 100.0 42 ..................................... TATGTGATGCCCGACCGGGGGAGGGTTAAAGATGCTCCTGTT 385180 37 100.0 34 ..................................... CTGATGGGAAAGATACCCCTATACATCCGATCGC 385251 37 100.0 34 ..................................... AACCCCAGGGATAGTTATCCCTATGCTATTTAGT 385322 37 100.0 33 ..................................... CGTGGATTTGGAATTTAATCTCAATAACAAAAT 385392 37 100.0 35 ..................................... CCTGAATTACAAGAACTCACTGGTGTTCGGAAAGG 385464 37 100.0 39 ..................................... TGAGTCACCCCCCGACGCGCCCCCGATGCCCAACGTTGG 385540 37 100.0 34 ..................................... ATAGATTGCCGTTGTCCCTCTGGACTGCCCAGAT 385611 37 100.0 35 ..................................... GGATTAACACCAACAACAGCACTTGCAGACATTAA 385683 37 100.0 35 ..................................... GACCCCAACGGAACCACAACGGCAGCAACACAATT 385755 37 100.0 35 ..................................... AGATGCTTCTTGAGATTCAAAGATTTGCTCAGGAA 385827 37 97.3 35 ....................T................ GCGTTGCTTTCCCGATATTTGCTTACAGCTTGGTT 385899 37 100.0 36 ..................................... AGCCATTACAGTGGGCCAGATAAAGCCCATCACATT 385972 37 100.0 35 ..................................... GCCGAAACTGAACTAATCCAGCGCGAGAAGTTTGA 386044 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== =============================================== ================== 34 37 99.8 36 ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Left flank : TGTTTGTTGTGGTGTCCTACGATATCTCTGAGGATAAGCGCCGAACCAAGATTCACAAGATTCTCAAGTCTTATGGACAATGGGTGCAATATAGTATCTTTGAGTGTTCGCTGGAGCCGACGGACTATGCTAGATTGCGATCGCGCCTACAAAAACTGATCCAAGCCGACACCGATAGCATCCGTTTCTATTTCCTCTGTGGCTGCTGTCAGGGAAAGGTGGAACGTATCGGCGGCGAAATGCCTCGCGATGAGGTGGCTTTCTTCGCCTAAGTGCGCGAGGGGGAGGGTGTAGATTTTGCGGTTATCCCCAAGTTCTTCTATACCCTCTCTGGCTAAGGTTTTCAGCGTTTGTTCTCTCAAAGATGCCCGCGCCCTTTACAGGGTAAGGCTTTCAGGCTCTGAGGCTTGTCTGTTCCCCCAGGGTATGCTATCTTTGACTCATCGCTCGCGCATCGGTACCTGGAAAACTAAATACACCAAGGCTTCTGGGTTGCCGCT # Right flank : AAGAGAAAAGCATTAATCAGGGAGAAAGAAAACCTTCTCAAAACTTCCGGAGGCTGGGGCTTGACAGTGAAACAGGGAGCATGAACAATAAAATAGCTGGATTCTCTCCCTACACACCCAAGCCCGAACCTTGTTGATTGGTTTACATGAAAACTGAAGAAATCGAGATTCCCCATTCTCTGATCGTGGGATGCTGGCAACTGGACGATCGCAGTTGGACAAGCATCAGCGAACCCGAAATTGAACGCGCAATTGATACCTACTTAGCATTAGGGTTGCGCTGCTTTGATACCGCCGATATTTATGGACGTAGTGAAAGCTTAATTGGGCGGTTATTGAAAGGGCGAGACTGCACGATTTTTACCAAAGCCGTCTTTTTTGGAGAAGTCCCCACCCCTAGCCAAGTCCGTAACAAAATTGAAACCTCTTTACGCTATCTCAAGCAGAGTAGCCTAGATTGCGTGCAGGTTCACTGGCATAATCCCCAACTCGATTTTAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 3431-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000010.1 Desertifilum sp. FACHB-868 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3430 37 100.0 35 ..................................... AGATCCTTGGACGGGTGGAATCTGCCAATACAAAA 3358 37 100.0 35 ..................................... TGATACCTATCAGTGGCTTTCTAGGGTTGAGAAAA 3286 37 100.0 34 ..................................... TCGGCTAGTTGAACGTAGTGCTGTTTATCGCTGT 3215 37 100.0 37 ..................................... CTCTTCCTTATAATCTGTCCGGCTTCAGCATCTGCCA 3141 37 100.0 43 ..................................... ATTGCCCAAATTTCTTCAATTGCAGAAAGCATCCCACCGGATG 3061 37 100.0 34 ..................................... TTTCGAGATTACTGCGATCTGATGAAAATCGATG 2990 37 100.0 36 ..................................... GCGATCGCTGCTGATGCTCGAAACGGCTGACCTGGG 2917 37 100.0 35 ..................................... TCTGCCTTACACTTACTACCCTGGTGATGAGTATT 2845 37 100.0 35 ..................................... TAGCTTTTCCTTCTCGGCATCCTCGCGTTTTTTGA 2773 37 100.0 37 ..................................... AGGCAACTCCTCTAGGGAGCAGCCCAGCGTTTGGCAA 2699 37 100.0 37 ..................................... AAGAGAATGTTGTACTGCCAAGGATCTTGTCCGGCAG 2625 37 100.0 34 ..................................... CGGTATATTGAGCATTTACAGACCGCGATCGCGC 2554 37 100.0 34 ..................................... GAATGACGGCTCGCATTATTAAGCCTCAGTGCGA 2483 37 100.0 34 ..................................... TGGCCCCTCTCAAGATTCTAAGCTCTGCGCTCAA 2412 37 100.0 33 ..................................... GGGAGTGAATACTAATGGAATTAATCTGGAATC 2342 37 100.0 35 ..................................... TACACAATTAATAATACCGAAACCTATTCTTTTAC 2270 37 100.0 34 ..................................... ATCTTCCTTTTCTATTCCAATTTCAGCCGACCTA 2199 37 100.0 34 ..................................... ACCTACCCTCTATCTAGCTATAGTTTTCTATTCC 2128 37 100.0 35 ..................................... ATTACAGGTTGATTTGGAAGTAGAGAAGGTATATC 2056 37 100.0 34 ..................................... TCAGTAACTTGATTTTACTCACCTCTAACATTCT 1985 37 100.0 35 ..................................... AATACTTGATTGATAAACTATTTGATCTTAAACCA 1913 37 100.0 34 ..................................... ATCAAATCAGAAGAATTAAAATTAGTCGAACCTG 1842 37 100.0 35 ..................................... CGCTGCTCGATCGAATCGAGTGCGATCGCCTAGCC 1770 37 100.0 38 ..................................... ACTACCCTATCCGTGTAACCAGACTTTAACTAAATATT 1695 37 100.0 35 ..................................... GGCTCAACCACAAAGGGAAAATTAACCGATTTAAG 1623 37 100.0 36 ..................................... TTGTCGAGGATGCGGCGCTGCACATCAACAGGTAAT 1550 37 100.0 41 ..................................... AGAAACCGGCGAGACAACCTGAAAAAATCCCAATGGTGGAA 1472 37 100.0 41 ..................................... AATAAACAGAAACAGGCTATCCCCTGGTAGAATCCTTGAGG 1394 37 100.0 34 ..................................... AAAAATGCAGATTCAGGTTGGTTCGATTGTCCGA 1323 37 100.0 39 ..................................... TTAGAAAATAATGTTGACCTTGATATCGAAAATTACCGG 1247 37 100.0 35 ..................................... CCCGCTGATATCAAGCATCAAGCCGATCAATTGAT 1175 37 100.0 34 ..................................... CTATAGTAAATTTTACTCTCCCTTCGTACTTCAT 1104 37 100.0 35 ..................................... TTGACTGGTTAAAGGGACTCCCTCAACGCGATAGA 1032 37 100.0 35 ..................................... ACAATTTACGATATTTTCTACGATGAGATTCATTT 960 37 100.0 35 ..................................... ATGATAAGAAGCCAACTGTAAGTTAGTTGTAATGA 888 37 97.3 37 ............T........................ ATAACTAGAGTTACCACTCCCCAGAAGGATCGGACAA 814 37 100.0 37 ..................................... TCTGGGTGCTGTGTTGTGCTGGTGAATCTGCGGCCGG 740 37 100.0 34 ..................................... CGGAAAACTTGCATCACCAGATTAGTGAACTGTC 669 37 100.0 36 ..................................... TGCTATACTCAAATTTGTAACCAAGGATAAAGAGAC 596 37 100.0 41 ..................................... GTTGACAATTTGACCGATAAACTCGCCGTTCTCATCAACAG 518 37 100.0 37 ..................................... ACGCCGAAAATGTGGATTCGCCTAATCCCGGCCTCAG 444 37 100.0 35 ..................................... CTCGATTTATGCGGCTAACTGGCAACGATTACAGA 372 37 100.0 34 ..................................... AGGAATTGGGGGAGGTGTAGGAGTTCCCCCACCT 301 37 100.0 34 ..................................... TTGAGCATAATTTAAGTTTTCTTCCATGACTAAA 230 37 100.0 35 ..................................... GGTCAGACCACAAAGGGAAAATTAACCGATTTAAG 158 36 94.6 0 ................................-.G.. | ========== ====== ====== ====== ===================================== =========================================== ================== 46 37 99.8 36 GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : GCGGGAGTTGGTTGAGGAGATTGGCTACTGTCCGCCTCAGTTAGCTTTGTTTGGTGAATATGCCGATGCGCGGGTGGTGCGCTATGTCTTTCAAGGCGCGTTAGAGGTGGGGTTGGAGGCGCTGGTTTTGGGGGAAGGCTGGGATTTTGCCTTGCTGACGGTTGAAGAGATCCAAAAGGGCGATCGTTTTTCTCCAAAAGCAGGAGTCCGCCCCCTGGGTACGCCTCATCAGCGCATTCTGTTAGATTTTATCGCCCAAAATCGCTCTGAGTTGGCGCGGGGGGGTGGGTGTGGATTTTAAGTGTTTCTCCCAAATCGCCGAAGCCCTCTCTGGGTCTGGCTTGGCGCTGTTTTTATCGGGGTTGAGCCTCGCGCCCCTTACGCCACAAGGTTTTTAGCGTTTTCGACTATCTTTTTATTCCCCAAGATGCTATACTTCTTCTTGTGCCGCGCAAGCGAACCTCGAAAACTAAATATATCAAGCCTTCTGGGTGGCTGCC # Right flank : CCTCCTGCATGAATCATGAGACATGGGTCAGTTCATAGTTGAGCAAACCAGCAATCAAGTTCAAGCGCAAGCCAAATCGCCTTCTACGGTTACGATAACGTCCTGAAAAGATCCGAAAAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 55856-59348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000003.1 Desertifilum sp. FACHB-868 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 55856 37 100.0 35 ..................................... AGGAACATATGCGACTAAATGAAAAATGGTATAGC 55928 37 100.0 34 ..................................... TATAGAAAATAATGTTCCTTTAGACCTCGGCTCT 55999 37 100.0 39 ..................................... ACCACAACTTCGTAGACGAACACCTGAAGAACCCAAGAA 56075 37 100.0 36 ..................................... CACGCGAGAAATTTCCGAAAGAGATTTTAGATAGTC 56148 37 100.0 36 ..................................... GAGGCTATCAGCCAAGATTTTGACTTTCTCAATACC 56221 37 100.0 38 ..................................... ATCAATGAGAATGGTACATCCATCGCCAACATCATATT 56296 37 100.0 37 ..................................... TGGACGCCCAAGGACGGCTTCACGGACAAGGAAACCG 56370 37 100.0 35 ..................................... TCGCGAGGAATATCGCGCTAACTACGATCGCTCGG 56442 37 100.0 36 ..................................... GCCGCTGACCTCCTTCTGTAGCTCGTTGAGCTTGAA 56515 37 100.0 36 ..................................... CGAGAAATCCCCAAATCGCTTCGCGCCCGGTCTAGC 56588 37 100.0 35 ..................................... CTGGCAAACCTTCAGCTTGCTCGAAAAATCGCCCA 56660 37 100.0 35 ..................................... TTTACAAGCGGGTTTCTCACTTAGAATCAGAGTTT 56732 37 100.0 39 ..................................... AAAAAAGCGGCCATTGACCGCTTCATTTTTTCTAATCTT 56808 37 100.0 35 ..................................... AGACTTTCCGGCTCCGGCTATCCCTCCAAAAAATA 56880 37 100.0 38 ..................................... TTTGCTGCCCTTGAGCGAGTGGCAAGTGGTGAAGAGTC 56955 37 100.0 38 ..................................... TTCGGGGAAGAATATTTAACCCCAGACGATTTCGTGAA 57030 37 100.0 35 ..................................... AGAAGGTTTAACTCGAATAGTTGTCCCTGAGCAGT 57102 37 100.0 34 ..................................... TTTTGGGGCTTATGTAGTCCTGCATTCGCTGATA 57173 37 100.0 36 ..................................... TTTAGGATTTATTATGGCTGCTAAAAAATCTTGCTC 57246 37 100.0 37 ..................................... AGGATGGTATCGAGCATTCTTGGGCGGGTAGTCGGAT 57320 37 100.0 50 ..................................... CTGAATTGAGGTAATGAAGCGATCTTCTCACCTCATAAGAGGTTGGTCGA 57407 37 100.0 35 ..................................... AAGATGGCCGCTTTTTTAACGCCAAACTGACACAC 57479 37 100.0 38 ..................................... GGCGATCGCTTTTTGTTGGGGCATCGTTGGGAGGCGGC 57554 37 100.0 35 ..................................... AAAAAACTGGTTAAGAAATTCCTTGTCCGCATTGT 57626 37 100.0 38 ..................................... GTAGCCCAAAACCGCAACGGTTGCGGTTTTACCGTATT 57701 37 100.0 35 ..................................... GGCGGGCTTCTGTGCAAAGGATACTGCTTGAAGTT 57773 37 100.0 33 ..................................... GGCAGGGTGGGGAAGCGGTGATGACGCTGATTG 57843 37 100.0 35 ..................................... GACGCTTTCATTCCACTCGCTCTCAACATCTGGAA 57915 37 100.0 34 ..................................... GAGAAGGGCTTCAAGTCTTTGGAGTCCGCAATCT 57986 37 100.0 36 ..................................... GTTTTTCTGCAACAACTCCTAATCCAATGATTTGAA 58059 37 100.0 44 ..................................... ACAGCAATCCGAATTAGTGCGCCTCCAAGCAGCAAATCAGGCAG 58140 37 100.0 35 ..................................... AGCATTGCCGAACTTTCAACGTACCCAATTCGTTT 58212 37 100.0 37 ..................................... CAGTCTTTGCCCTGAAAGCTCCGTGCAATGGCACAAA 58286 37 100.0 39 ..................................... AAGTACCATCCCGCCCCAGTAGGAAAACGCTGCCGCCAT 58362 37 100.0 38 ..................................... TGCAACCTGTTAACCAGCAGAAGTAAGCGTACGCCCAA 58437 37 100.0 33 ..................................... GAGCAGATCCGAAAACTTGCTTTCAAGCTCTCG 58507 37 100.0 34 ..................................... ATAACTTGCGCCAGACTGACATATAAAAGGATGG 58578 37 100.0 34 ..................................... CATCAAGCCCAGTAAGATTAAGCTGAAGTATCCA 58649 37 100.0 37 ..................................... AAATAGAAAGCCATGACTACTGAAAACTTTAAGCTTG 58723 37 100.0 35 ..................................... ACAAGCGTTGGTAACTCTGTGGTGGCGTCCGTTGT 58795 37 100.0 44 ..................................... AGCGCTTGGCACCACCTTGGGGAACGTGATCTGCGGTGGAAATT 58876 37 100.0 43 ..................................... AATTGCCGGAACTGTTTGGCGACCTGGTTGTCATGCTGCGCTG 58956 37 100.0 33 ..................................... GGCAGCCGTGCCAGGACTTCCACCTAAGTACAT 59026 37 100.0 37 ..................................... TTAAATCGCGCATGATTCACCTAAAATTTTGCACCGC 59100 37 100.0 33 ..................................... CTGAGCCATTGCCCTATCACCTCCTCTACCCAT 59170 37 100.0 35 ..................................... AGGTTCAGAGAAATGCGAACCCTGCGGATCTTAGA 59242 37 100.0 33 ..................................... TTGCCTGTCGCCTTTGGATAATCTCCAGGCTGA 59312 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 48 37 100.0 37 ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Left flank : GTGGTGAACCCTGCGGCGAAGAGTAATAAAAGCAGTCCGATCTACGGAATGCCAATTTTAGAGGTAGACAAGGCAAAACATACGATTGTTGTGAAGCGCAGCATGAGTACCGGGTTTGCTGGGGTTGATAATGACTTGTTCTACAAGGATAAGACGATGATGCTGTTTGGTAATGCCAAGGATGTGATTGCCAAGCTCGTTTCGGAAGTGAAGCAACTCTAAGCCCAGAGTCGTTTGCGGAGGAAGGGAAGAGGGTTATCCCTTCCTCTGTTGGGCGCGAGGGGGTGGGTGTAGATTTCAGCGATTGTGAGGTAGCCGCTAGAAGCCCCCAGGCGCAAGGTTTTGAGTTGACTTGGCTATTCTTGAGCCTCGCGCACCTGATCTCACAAGGGTTTTAGCGATTTGGACTATCTTTTGTCTGGGCAATATGCTACATTAAGTTCAGCCTCGCGCAAATGCACCTGGAAAACTAAATATACCAAGGCTTTCGGGCGTCCGCG # Right flank : CAGCAAAGACTTTTAGAAACACGATCGAACAAGCGATCGCCCTCAAGCAACCCCCTATAATCCCTAGAAGAGAGAGAACCCAAGAAGCTCAGAGAACCTCTCAAGCGCGCTGTCGCAAAAGCTGCTGCCATCTAACCTTCAGCGCCACATAGAGAGGAAATTGAAAATGCTCCAAAACCAGCCAACTCACAAAACTCAAATGAGAGAAAAACGTGAGAACCGTCCACACAACAGGGAACCAGTAAGCCGAACAGATCCCGCCACTTTGGAGCAAATCCCAAGGCGAGAGAGTCGTGCAATAGCTGTTTGGCATTGGGGGGAACGTGTGATACGCCAACCCAATTAACGTAGGGGGTAAGAAAACGAGCGCAATACCCACTAGCCAAATTTCCCAGGTTAAATCTAAATCTTCGCGACGATGGGTGGCTTTCCAGGTTTTCCCCGTCCATCGCCAAGAAAGCGGTTGGGAACCATCCACCACCTGAACTCTTTGTTTATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 295502-288644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000004.1 Desertifilum sp. FACHB-868 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 295501 37 100.0 35 ..................................... TGCCCACACCGGCCTGGATTGTAATTGAGAGGTGG 295429 37 100.0 38 ..................................... CCTACTAATGAAGAGCTTATTTATCCTCATCTCCAGGA 295354 37 100.0 36 ..................................... TTACCTTGCTGCTCGGAGTAGGTGCGATCGCACTTA 295281 37 100.0 35 ..................................... GAGCTTGCTCAAGTGGATCGCGGGGGGCGGCTTGT 295209 37 100.0 35 ..................................... CCGCAAGCCTTCAGGGTCTTTCGTATCCTTCTCAA 295137 37 100.0 34 ..................................... CAATTTGCCGATTACCGCTCTGGTGATTGCGATG 295066 37 100.0 34 ..................................... CGGCATCTTGTAGAGCCTACCGCCGCGATGTCGC 294995 37 100.0 34 ..................................... TTGCTGACGTGCCTTTAGGGGAACCAATTCCAGG 294924 37 100.0 36 ..................................... GGTTCCATTGCCGTTGTCTGTGAACAACTCAGCAAC 294851 37 100.0 34 ..................................... CAACGCTTCCCCCCAAATGGCGAAAGCGCTAGCC 294780 37 100.0 35 ..................................... CAGCAGCGTAGCCTTTGCGAACAGCAGACGAAAAC 294708 37 100.0 34 ..................................... GAAGTCCACACCGCAACCGAACGCTACGAACGGT 294637 37 100.0 36 ..................................... TGATGACCGGGGTGGGATCATCTCCCTGGACAACTG 294564 37 100.0 36 ..................................... TTCCTCATTGCTTAAAAAAGCAATGAAATATGTTTG 294491 37 100.0 39 ..................................... GCGCGAGAGGCTTTGATATCTGGGATGAGCCAGCCTGAC 294415 37 100.0 35 ..................................... AAATTCTGCAAGAAAATGGAATCCAATACACAGCT 294343 37 100.0 37 ..................................... AGTTTAACTTGGGAATTCGATAACAAGAAAGAATCGA 294269 37 100.0 35 ..................................... CAATCAACTCCTCTTCAGTGGGTTCCAATTCAAAT 294197 37 100.0 35 ..................................... CAATTCCTAAAGCTTTAAGTCTTCTATTTGCTAAA 294125 37 100.0 34 ..................................... GGCTGATGAAATTCAATTTATTTCCGCAATTCGG 294054 37 100.0 35 ..................................... TTCTGAAGCCTGAGCAACCAAGCTGCTCAGTAGAT 293982 37 100.0 38 ..................................... CTCTTATCCTTAATGCTGGACGCGATCGCACTTTTAAC 293907 37 100.0 31 ..................................... GCCGCAATTCCGTCAATGGTTTCGGGAGACG 293839 37 100.0 36 ..................................... AAGCCCTATACCAATTTCCTGCTTACTCTCCCAGGA 293766 37 100.0 38 ..................................... CGGGAAGCCCGCGCCAATCAAGCAATTGAGGAATTGGA 293691 37 100.0 40 ..................................... GCTTGGTATTGACCCCCTTGAACGAATTCATTATTTTCTG 293614 37 100.0 35 ..................................... AAAAATTACGGCAGCAAGAATACCGCCATTGGGGA 293542 37 100.0 32 ..................................... AAATAGACATAGCGCCCTCAAGACGTGCGGAA 293473 37 100.0 33 ..................................... GATATTCCGGCTGATATCAAGCATCAAGCCGAT 293403 37 100.0 40 ..................................... TTGTATTTGCCACCACTGATTGGATTGGCATCTTTCAGAA 293326 37 100.0 36 ..................................... TACCATCGCTGGAAAGCAGTGCTAAAATTAGATTGG 293253 37 100.0 34 ..................................... TGCTTTACTGCTTGAGTAAAACTTGAAGGTTGTA 293182 37 100.0 41 ..................................... CGGCTGGCGTATTCTATTCCTCTGGCGCGAACGGCTCCGGT 293104 37 100.0 35 ..................................... CCTGACCTTCCCCAAAACTGGAACCCACAAGACTA 293032 37 100.0 35 ..................................... GCCCTCGTATTCCCATCCGCATTGATCGCAGCAGT 292960 37 100.0 39 ..................................... GGCTAAATTTCGATTCTACCGCTCCGAAGGAATCATAGA 292884 37 100.0 32 ..................................... CAGTGAATCACAAATCTGGACTAGGCGATCTC 292815 37 100.0 34 ..................................... CTTATTTTAGAACCAATCTTAAATACCCAAGATT 292744 37 100.0 34 ..................................... TTATAGGTGCCATAAGTAGCGATATATACTCCAG 292673 37 100.0 35 ..................................... TCCGTGAGAGAGATTAAAATTAGCAACCCCTTATC 292601 37 100.0 34 ..................................... CTGGTAAATGTTTGCAATATACTTATTACGTTCT 292530 37 100.0 35 ..................................... TTCTAAATCTTCAAGAGACCAATCTATTAAAGTAA 292458 37 100.0 38 ..................................... GGCTCGACGAACATTAACGGACGCGATCGCAGATTATA 292383 37 100.0 34 ..................................... GCAAAGATAAAAGCTGTTTGCAAGGTAACAAAAG 292312 37 100.0 37 ..................................... CAGATTATGAGCAGCACTAGGAAGTGCGCCGGATAGA 292238 37 100.0 37 ..................................... TACGCTCCCCGCCGTCACCCTCCACCCGTGGTGCGTG 292164 37 100.0 35 ..................................... ACCGCTCCCCGGATTTTCCTTTCGGTATCTAGCTA 292092 37 100.0 30 ..................................... AAAGTAGGCGATCGCCCGGTTTATTTGAGA 292025 37 100.0 34 ..................................... CTGGCTCTTTTGCCTTTGAGGTTGCTTCCTTAGC 291954 37 100.0 39 ..................................... CAATTTTACACTACGCCACAAGAACAAGACAGCAATAAT 291878 37 100.0 36 ..................................... CATCGGCTCATAGATTCGGAAACAATCCGCAATACT 291805 37 100.0 37 ..................................... TCGCTTTGCAATTGGGAGACACATGAGATGGAATTGA 291731 37 100.0 38 ..................................... ATCGGCTTTGCAATCAAAATCTTTATGGAGTTATAAAA 291656 37 100.0 34 ..................................... ACCTCCGATAAAGACGGGAATGTTTCCGGTTACT 291585 37 100.0 41 ..................................... TGTATCAAGACTAACCACATTCTCTATTTGTCGTGCAACGT 291507 37 100.0 35 ..................................... TCAAATTCTACGGGGTAAGTTTCCTCAGTTTCATC 291435 37 100.0 35 ..................................... GAATTTCTCCAGCACGATCTAGAACTGGCACAACT 291363 37 100.0 35 ..................................... ACCTGCCCACAGGAATCAGCCGTTCTGGTAACAGC 291291 37 100.0 38 ..................................... CTCACATACCTAGCTCTAATAGTTTGACCTCCATACTG 291216 37 100.0 43 ..................................... TGAATTGATCGATCACCTAGAAGTCGGCAAGGGAGTCGTCATC 291136 37 100.0 34 ..................................... ACCGCGCTGCCTTGATTCGTTCGGTTTGGCGCTC 291065 37 100.0 33 ..................................... TTATCTTCGTTCTTAATAGGAGAAAAATCGATG 290995 37 100.0 35 ..................................... AAGAGGCAGCAAAAAGCCCCGACCGGAGCCGAGGC 290923 37 100.0 35 ..................................... AACAAAGACCTGAAGAACCCAAGAGCATCGTTTTT 290851 37 100.0 35 ..................................... TTACCGCCGGTTATGTGAGCTTCTGGGAAACTCGA 290779 37 100.0 33 ..................................... TGATATCTCCATCCTCAATGCTGCATTTGAGGA 290709 37 100.0 36 ..................................... AGACTCAACCGACTTGTTATAAAACAACACCTCCTT 290636 37 100.0 36 ..................................... TAACGCCCGAATCAGCTCACAGAGAAAGTAAACAGC 290563 37 100.0 33 ..................................... TGCGGTCTCATCGGCTTTATCAAAATATATAAA 290493 37 100.0 34 ..................................... GTTTGCCTCAACTTTCCGGGGCAATTGTCCAGCG 290422 37 100.0 33 ..................................... GAGAGGGATAAAAGCCGAGAGGCTAAGTTCAAG 290352 37 100.0 32 ..................................... GTTGGGGCGATCGCATTAAATCTCCGCCAACC 290283 37 100.0 35 ..................................... CAGTACAGCCAGCGACCGCGATATCCGCGTTCGCC 290211 37 100.0 43 ..................................... AAATATTAGTGAACCACTACCTTTTAGCTTAATAGCTGCACTT 290131 37 100.0 34 ..................................... TATGCATTCGGATGCTATACTGATGATACTGCTG 290060 37 97.3 41 ...................T................. TTGAAACAAAGTAAATTGCAATCCCAAGTCTCTGCTGAAGC 289982 37 100.0 35 ..................................... TTGAAACCGCAATTGAAGGAATCCAACTCTATGTC 289910 37 100.0 32 ..................................... ATGGGATACCACTGGCTAGGCCACATTATCGA 289841 37 100.0 38 ..................................... GCGGCGCTGGGGGCTGGGGTTCTGGCAGCGGAGGCGGC 289766 37 100.0 39 ..................................... ACAAGAATTTACAACTCTAATAGGAGTCAATGATTTCAA 289690 37 100.0 35 ..................................... CGGACAATCGCTCATACCAAAAAATCGTGCAACGC 289618 37 100.0 34 ..................................... GGCCGGAAGAATGCCTTCGACAACAAGGGCTGTG 289547 37 100.0 33 ..................................... TTCTCCTTTTATCTTCGGCGGGTGCGATCGCAC 289477 37 100.0 34 ..................................... ACGCTTGGGCGATCGCTTTATAAAAACTACCGAA 289406 37 100.0 38 ..................................... GAGGCGATCGCAACCGTTGCCATTGAAGAGGGCGAATT 289331 37 100.0 34 ..................................... ACATCGCCGGGAAATTTAGGTCAGGCAGAGAAAT 289260 37 100.0 35 ..................................... ATTTTGAAGAGTTCGTTCATGTTTATTAAATATTG 289188 37 100.0 33 ..................................... ATGCAGCAGCGAGAACTCAGACAGCTTGACCTC 289118 37 100.0 32 ..................................... CCTAGGATTCCAGCCTGCCACTGGATTTATGA 289049 37 100.0 41 ..................................... TCGCTAGATTCCCTCGCGATTCCAACAACTGACGGGACAGG 288971 37 100.0 37 ..................................... ACTGTGCAATCCCATAAAGGTAAATCCTTTTATGCCG 288897 37 100.0 35 ..................................... GTATTTTGCCGACTACTTTGATGATCTGTTACAGA 288825 37 100.0 36 ..................................... TGGCTTAGATCGCTTGACGGCTTGTTGGATGCTCTG 288752 37 97.3 35 ....................................A GGGGTAGTTCATAGCAGTTTGTTCTGGGAGCTAAT 288680 37 91.9 0 .............T.........A............G | ========== ====== ====== ====== ===================================== =========================================== ================== 95 37 99.9 36 ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTTGGGCAAGTATGGGCCAGGAGTCGGAAGCTGATAACCGCATTCCCCTATTTCAACCCTATCAACTCAATACGGAGTTATTAGGCCATGCGGACAAAGATGCGATCGTTCTCCATTGTCTCCCAGCCCATCGCGGCGAGGAAATTACCCATGAGGTGATGGAGGGTTCGCACTCGCGCATTTGGGATCAAGCAGAAAACCGGATGCACGCTCAAAAGGCTTTGCTGGCAAGTTTGCTAGGCTGCGACTAGGCGCGTTTCTTCTGGGCGTTGCGCGAGGGGTTGGGTGTGGATTTTCTAAGGTTGCTAAATATCGCTGGAAGGCTGATGGCTGACAGGTTTGGGGGCATTTGCAAATCATGAAGGCTCGCGCACCTTATCTATCAAGCTTTTCAGCGATTTGCTCTTGTGTTCCCTTGGGTTCTATGCTACCTTTAGGTCAGCCTCGCGCAAGCGTACCTGGAAAACTAAATATACCAAGGGTTCTGGTCGCCCGCG # Right flank : CTGTAATTGAGCGAAAATAGATAAATCGAATTGCCGAGAGAAGAGAACGAGGACAAATCGAAACCATGTACAAATTTTACTTACCAAACCTGGGCGTCACAGTTTCGCTAGAGGTTGAAGACCCCAATGCTAGTGCGGAGATGAAATTTGAGGGAGAGAAACCGCAAGTTCGGCTAACCCGCGCCGAACTACATGGAGCGTATGGAGCCTTTGGTCATACCATTGATACATGGGCAACCCCCATTGACCTTCATTGTGCATTAGTGACCGCAGCCCAGAGCGATCGCAGATTTGAATTTGAGATGACTGAAGGCCAAATTGATAGCTACGATCCGGGCATCCCACCCGATGCAATCACCTAACAGCAATATAGCGTTACCTTCCACCCTCGCCATCCCTAATTTTAGGAATTGGGTTGCAGGCGATCGCACTTCCACTGCCCATACCCCTTGTAATAAAACTGTAAAGATTCCATAAACCAGGCATAAAACTTAATTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 11007-7009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000005.1 Desertifilum sp. FACHB-868 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 11006 37 100.0 36 ..................................... CTTCTCCGGACTGGTAGCCACCAACCAAAGCAATGA 10933 37 100.0 36 ..................................... TGAACGTCGGTTTTACCTTGCTGCTCGGAGTAGGTG 10860 37 100.0 35 ..................................... TGGAGAAAACTTCAGACCTTAAATCATACCTGGGG 10788 37 100.0 37 ..................................... TCTTCATCGTTCCAAAGCGTAATTCTAGAACCCCATC 10714 37 86.5 34 .GG.G.T..T........................... TCTTCATCGTTTCACGCAAAACGGCCCCGCTTTG 10643 37 100.0 41 ..................................... CAGGGAGAAGAGGCTACCCCAGACATCAGGGTACAACTGTG 10565 37 100.0 35 ..................................... TTCCCCACTTTTGCTTGTATATTTTTAATCAGCGC 10493 37 100.0 35 ..................................... CCTTGTCGCTGGCAGGATACCCCTAGAGGGCATAC 10421 37 100.0 50 ..................................... CTGGAGTGTATTCGATTTTTGAAAGAGACGAGCAAGTTGTAGCATTGCAA 10334 37 100.0 34 ..................................... AAAGCCGCCGGGGGGGGAGATCCGGAGATGAAAA 10263 37 100.0 35 ..................................... CGATCTATCTTGATGGCTTCTAGTTGATTTTTAAG 10191 37 100.0 34 ..................................... TTTTAGCCTGATTGCGGCTTGGGCCTCTTTCAAC 10120 37 100.0 35 ..................................... GGCTTGCTTAAATATCCGATTGTCCTTAGCTTTGT 10048 37 100.0 38 ..................................... TTCGATTTAAGCTGCGGTTAAAAGCTCCCATTCATCGG 9973 37 100.0 36 ..................................... TTGCCGCTAAGAGCTTGCCATGCAGTGGTAGCCTTC 9900 37 100.0 34 ..................................... CCGACATAGCGCATGGATTCGCCCAAGCTGCCGA 9829 37 100.0 35 ..................................... GCCGCCGCGACTGTGGTATTGCCTTGCTTCATCCG 9757 37 100.0 35 ..................................... CGGAAACTCTGAGAACCTGAATCCCGGAATCTTAG 9685 37 100.0 41 ..................................... GAATCCCCTAGCACACCCGCTACAGCTAGCGGCAGACCGTT 9607 37 100.0 36 ..................................... CACTTCTGGCTCTGGCTCAGATTTCTTCCGGGGCAT 9534 37 100.0 33 ..................................... TCATTCCACCACTGCCAACATCACCTGGTAAGG 9464 37 100.0 35 ..................................... TTAACCACTTATTCATAAACTCACCACCTAAAAAG 9392 37 100.0 33 ..................................... TTTAACCCCGGCCGCAATCGCGAGACGTTAAGC 9322 37 100.0 38 ..................................... CTTAAGCTGGATATTTTTAAGCGGATACGCAACTGGGA 9247 37 100.0 40 ..................................... TTTACAACGCCCTGTAAGCTGGCTTTAACCTGATCTGAGG 9170 37 100.0 34 ..................................... AGAAATTCCGAGGGAGGCATTAAAGATAATGCCC 9099 37 100.0 37 ..................................... AATGCCTAGCGCCTCCGAAAAGAAAGCGTCAACAAGT 9025 37 100.0 37 ..................................... GAAATCTCGATCAAGGCGACAGATACCAAGGCAAGTG 8951 37 100.0 34 ..................................... TCCTGCTTATGTCTGTATCCGTTATCTAGAGCGC 8880 37 100.0 36 ..................................... ACGATTTGCCTTTATTTCTGGCTTCAATATCTAGAG 8807 37 100.0 44 ..................................... TTGACGCATGGGACTAAAAGCTAGCCAACAATTCCCCTCAAAAG 8726 37 100.0 35 ..................................... GAGAAACGGGCGCGAACTTTCGCTAATTTGATAAA 8654 37 100.0 33 ..................................... GTTGTAAGTCGCCACGCCAAGGACGCGCCTCAA 8584 37 100.0 34 ..................................... GCGGTTTTGGGCTACAACGGTATTTAAAATAAAA 8513 37 100.0 34 ..................................... GATTGGTTACAGGGGACTTTTCCCAACCAAAATA 8442 37 100.0 35 ..................................... TTAGATTAAGTGAAGCTGGAGGGGAAATATTTTTA 8370 37 100.0 43 ..................................... AAAAACTGAGAGGGAGGCATCAAAGATAATGCCCCCGTGTCAG 8290 37 100.0 36 ..................................... CGCTTCAATCCGCGTGCCATCATCCATATTAAGGAG 8217 37 100.0 36 ..................................... AGCGATAATCCGGGCATGATTTCTAGAAATGCGATT 8144 37 100.0 36 ..................................... TCCATGTCAAAGCTTCGATCGCGCTGTCGCTGGGTT 8071 37 100.0 38 ..................................... CTTCTGTAGAATCGTTTTGCGCTATTGGCAACTCTATC 7996 37 100.0 34 ..................................... ACTCTAATTGCTTAAAAGCCTACTAGGAATCTAA 7925 37 100.0 39 ..................................... AAATTAAACGAAGGCAGCGATCCAAGCAATCCTAGGGTT 7849 37 100.0 34 ..................................... TACAGCAGTGCTTACCTTTCAAGAATTGCTGCTG 7778 37 100.0 35 ..................................... CCGTCACTCCATTCAAACCGAGCGGCGTACGCCAC 7706 37 100.0 33 ..................................... TAAAGCCTTTGATCGTACAGAAGCAGTGGCAGA 7636 37 100.0 34 ..................................... TGGGATGACAAGCTTTGGAACAAGAAAAAAGAAG 7565 37 100.0 39 ..................................... GGTTTCGCTGAGGGCTTCAGCTTCGACAAATTCGCAAGG 7489 37 100.0 42 ..................................... GAGGCGCTCCGAAATTTCATCCACCTCGAAGCCGGTGCCAGA 7410 37 100.0 34 ..................................... AACTGTTTGTAAACTTCAGCAGCATTGTCCTCTT 7339 37 100.0 37 ..................................... AGGATGATTGAGGTTGTTACGAAGGTGGGTAGCTAAT 7265 37 100.0 37 ..................................... TCGCAAACTCACCCAAAAAACGTTAAGGTGAATCCCC 7191 37 100.0 36 ..................................... AAGCGCGGTAATGCTGACGGTTGTACAGCCACTGCG 7118 37 100.0 36 ..................................... TAAACCTTTTTACTGGTAATCCCTACGGCTATCCAT 7045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 55 37 99.8 36 ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : CGTCAAAAATCCGCTTGTGGATACCCCCCGGTTCTAACCCCGCGACTTGGGTTGCACCCACATCAAAGGTAAAGCCTTTGCGCTTGAAGGTGGAAGCGCACCCACCGGGGACAATTGCTAAATCGAACGCGGTGACGGGATAATTTTGATGGGCTAAAAGGGCGGCGGCGGTTAGGCCTCCAATACCAGCACCAATGACGACGACTCGCGGTTTAGTCGAACTCATGCGTTAATAATTTACAATTCTTAATAACTTTATTCTAGCGGTACGCTCTGCGCGAGGGGGTGGGTGTGGATTTTTCCCTCTCTAAGAAAATCGCTAGAACTCTTGTCTAGTCTAAGTTACAAGAAACACCCTCTCAAAACACGTCGCGCACCTTGCCCAGTAAGGTTTCTGGCGTTTCTGTCTATCTTTTTGCAGTCCCCTATGGTACATTGGAGTCAGTCTCGCGCAAGCGTACCTCGAAAACTACATAAGTCAAGGGTTCCAGAAGACCGCG # Right flank : GAGATAGGGCGATCGCGCTCTCTAAATTAAACTGAGATCCTCCCGAATAAACTCCAAGTGTGATGGTTTTATATGTGGCTGTGTTTCTCCTGAAAAGCAGCAGTGGTGAAAAATACTGAAAAGTAACAATACCTGTTGTGCCATTGGGAGCCATTGAAAATGCAGAAACCCGAACCATCTACCAACTTGCACTACCTCATCCCCTTGAGCCTTGGTTTACTCCTGCTCGTCGGTTGCAGTAGCGCCCAAACCGCAGTCAGCCCCAACCCTGAACCCTCCGTTGCACCTAGCCCAGAACAACCCGCCACCCCGCCAAGTTCAAACGAAACCAGCCAACCCCCAGGTGTTGCTCAAAATCGCCCCACCTTTCAAGCCGATAGCGACAACCCCAACTACCTGCGCGACTACGAACCCACCGAACCCCTCCCCGCCACAGGTAGAGTCACCATACGCGGCGATGCGCGACCTTTAGACCCTTCTAACTTATTTACTACCTGTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 39786-45011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRB010000016.1 Desertifilum sp. FACHB-868 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 39786 37 100.0 36 ..................................... GACAACAACACCGGAACGAGGGGCAAAACCCACAAA 39859 37 100.0 34 ..................................... TGTATACAAGGGGAGTTTTGCAGCGTTAGCGTGT 39930 37 100.0 34 ..................................... AACTAGCACCCCAACTTCATCGATAAAGTAGAGA 40001 37 100.0 38 ..................................... CCTATTTCAGGAGGGGACAGCCTGCATATACAACGCAG 40076 37 100.0 35 ..................................... TGTAGATGTTGGCGCTCATGCAATCATTAGTTCCG 40148 37 100.0 33 ..................................... TCCTTGAATCGATGCGACTACTCACCCTATGAA 40218 37 100.0 36 ..................................... CGCGGTAGCTGCGCTCCAAGGCGGCAGCTTGTTCGG 40291 37 100.0 35 ..................................... AGGAAGACTTGGAAGTTCTTGGGGAAAAAACTAAA 40363 37 100.0 36 ..................................... ACCGCTCAATTGCCTGAATTGCTTGGCAACCTGATT 40436 37 100.0 35 ..................................... CGCGACTTGGCAGAACAAGAACGAGCGATCGCATC 40508 37 100.0 35 ..................................... CAAAGGGACATAGATCTCGCTAGACCACTCCGAGG 40580 37 100.0 34 ..................................... ATCATATCGGTATTTAAGAAATCAAAATCTTGAT 40651 37 100.0 33 ..................................... TCTCCAACGAGCGATCAGCAACCTTTAGCACTT 40721 37 100.0 35 ..................................... ATCTAGCGCTTCTTTAATTTCGCATTTGCAATTGT 40793 37 100.0 33 ..................................... GCGAGTAACCTGATTGCAAGCAAATTCTAAATC 40863 37 100.0 36 ..................................... ACCGCTCAATTGCCTGAATTGCTTGGCAACCTGATT 40936 37 100.0 35 ..................................... CGCGACTTGGCAGAACAAGAACGAGCGATCGCATC 41008 37 100.0 35 ..................................... CAAAGGGACATAGATCTCGCTAGACCACTCCGAGG 41080 37 100.0 34 ..................................... ATCATATCGGTATTTAAGAAATCAAAATCTTGAT 41151 37 100.0 33 ..................................... TCTCCAACGAGCGATCAGCAACCTTTAGCACTT 41221 37 100.0 35 ..................................... ATCTAGCGCTTCTTTAATTTCGCATTTGCAATTGT 41293 37 100.0 33 ..................................... GCGAGTAACCTGATTGCAAGCAAATTCTAAATC 41363 37 100.0 39 ..................................... TGATGTAGAACTCCCACTTAACCACCTTTGGCTCAACAT 41439 37 100.0 43 ..................................... GCATCTTTTTCCTGGAAAGGCGTTTGACCCGCAATGCCTGCAA 41519 37 100.0 37 ..................................... GGAAAATGTTAGAAATTGGATTTCCGGAATAATAGCT 41593 37 100.0 52 ..................................... GATGTAATGGCACGCCTAAAAGTCAATATGCAGGCGATTGAACGCCTCACCA 41682 37 100.0 35 ..................................... CACTAGGGTGGTTTTTCCGCTCCGAGTTTTGGCAA 41754 37 100.0 35 ..................................... CAGACTTGGGAAACCGAAACCGCCCGCGCATTAAA 41826 37 100.0 39 ..................................... TCGTTCAAAATGGAAGATTTAGTCGATCGCGAGTTGTAT 41902 37 100.0 44 ..................................... GTCCGCATTGCAGAGCGCTCCTATGTGGAAGCAGAGATCGGCAA 41983 37 100.0 35 ..................................... GGGAATGCCCTAATTGCAAAACCAAGCACGATAGA 42055 37 100.0 37 ..................................... CATCGCCAACGGCGAAACCTTCATCTTAAAGCTAGAG 42129 37 100.0 34 ..................................... CAGCCCTAAAAATTTAGCAATCACATCGGGACTC 42200 37 100.0 35 ..................................... AAGGCAATATCATCTTCGTTGCGGGTGGGTCGAAG 42272 37 100.0 36 ..................................... TTAGAAAAGGTTGTTTTGCATGTTGCACCAACCTTG 42345 37 100.0 35 ..................................... TTGAAAGCGTTGTCAATTTCGTGGCAAGAGTATAT 42417 37 100.0 41 ..................................... ATGCGATGCTCTGCCTTTGACCCACCGTGCAATATCGGCAG 42495 37 100.0 37 ..................................... GCGACGTGAAACTAGCATTTTCTTCGTACTGCTTGAA 42569 37 100.0 44 ..................................... ATGAAGTTGGCGTAGAGAATCGGTTCAAAGGGAAACGGGATAGC 42650 37 100.0 34 ..................................... AAAATGTCGGCGGGGATGTCGGCATACTTCAAAC 42721 37 100.0 40 ..................................... TGTTTCTGATCGGTGCAGCGATCGTAATTGGCTCATCGCG 42798 37 100.0 38 ..................................... AGGATATCGCTAGGAATTTCCTGGTAACGAAGCGCATT 42873 37 100.0 35 ..................................... GGGATAAAGCTTCTCTTTTATCTTCTAGGTTTCTT 42945 37 100.0 37 ..................................... GCGATCGCCGCGACCTGGTTGAGGATTATTTTTGCGG 43019 37 100.0 45 ..................................... GAGCGCTTGACTGCTGATTCAGCCAATTTTCTACTGCGAACTGGC 43101 37 100.0 35 ..................................... GAGCGCTTGAGGATTGTATCTTGTTTGATTTTGAG 43173 37 100.0 35 ..................................... CATTGATTCCCAAGAGATGAATCTCTCAATACTTT 43245 37 100.0 35 ..................................... CGAGAATAGCGATCGCCGTATCGCCTACGACCTCG 43317 37 100.0 34 ..................................... AGCCATCGCTAGCAGTGTGGAGCGCATATCATCC 43388 37 100.0 34 ..................................... CTGCTGCTTGACGGCATTCCAAGCGGCCAACAAG 43459 37 100.0 35 ..................................... AGAAGGAATCATCACCGTTCCGCTGCTATTGGCGG 43531 37 100.0 33 ..................................... CTGGTAGATCGAATCGTTATGCAACGCGATCAG 43601 37 100.0 34 ..................................... TCCTCGTCAAGGGCGCGATCGCTGCTGAACACCA 43672 37 100.0 34 ..................................... CTATTGATAGCTTTGCTTTAGAGGTTCCCTCTGA 43743 37 100.0 34 ..................................... GCCGAAAACGTAGACAAGAAAACCCTATATTCGG 43814 37 100.0 34 ..................................... ACTAGATTCCAAGGTAGGTGTAGACTCAACTTTT 43885 37 100.0 38 ..................................... TCCTACTGGTGAACTTAGGGCTAACTCACCCAACACCA 43960 37 100.0 36 ..................................... TCATCCGAGATTCTACTTATCTTTATATTGAGCAAG 44033 37 100.0 34 ..................................... GGTGACGGCGCTCATTAAGTTGCCGAGCTTGATT 44104 37 100.0 37 ..................................... TCAAGAATTTCTCATAATATTATTAAGCCCGATATTA 44178 37 100.0 35 ..................................... TCCGCAGTTCGGGCAATTCATAATCTTTCCTCATT 44250 37 100.0 37 ..................................... TAAAATTTGCCGATTTTTTTCACTAGATAGCCAGTTA 44324 37 100.0 35 ..................................... TTTATTTGTGAGTCTATCGTATCACATCGTCAAAC 44396 37 100.0 34 ..................................... GCGATCGCTCTTTTGTTGGCGCTCGACTTTAGCG 44467 37 100.0 34 ..................................... AAGGCTTCAGTGGATTTGCTATACTTCTGCTTTT 44538 37 100.0 37 ..................................... CAGAGCAGAAAAGCGCCAATGAATCCGAGCTTGGTTC 44612 37 100.0 37 ..................................... CCTATCTAATCCGCTTTTGAATCTTAAGAAATTGCAA 44686 37 100.0 37 ..................................... TAATCAGAGATGGGCGAATGGCTCATTTGAGATTTGG 44760 37 100.0 36 ..................................... TTGTTCTACCCCTTTTTTGGAAAGATGAACAATTGC 44833 37 100.0 33 ..................................... AATACTATTATTGATATTATTATCTTATTATTC 44903 37 100.0 35 ..................................... AGCTCGGCGGGTTGATGTTTCCTTCCGATCTATTG 44975 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ==================================================== ================== 72 37 100.0 36 ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Left flank : GGCGATCGCACAATTCACCGTTCGCCGCCAAGCGGATGCTGAGGCGCTGTTGGAGTTATCTAATTATGCGTTTCCTCACCAGAAGCGCTTGCTGATTGAGTTTTTTGCGCGACAAGCGATCGCCAAGTGGCTTCACCCATTCTGGGGAGGGGGTTTCCCGCCGCCGATGTTTCAGTTGCTTTCAGATCCGATGACTCCCTATTCTGAGATTCTGGAACGCTATCGGGGTTGGATCGATCGGGTGAAGCGGGTACAGGTTTCTGGGGGATAGGTGGCGCGAGGGGGTGGGTGTGGTTTTGCTGGCAATAGCGCGATCGCTTGTAGCTCTTGCTGGGCTTGGTCGGGAGTGCGATCGCGGCTCTCAGGGGGTCGCGCTCTATACGGGGTAAGGTTTTCAACGATTTTGGCTTTTGATTTCTGGAAAACTATGGTACATTTAGAGCAGCCTCGCGCAAACGCACCTGGAAAACTAAATAACTCAAGGGTTCTAGCCTCCCGCG # Right flank : ACAGTAGGAAAAACGGAGCGAAATCGAACAGAGAACAGACTCAAGAGAGGATCGGAGAAACAACCGTTGGGGAGGGAGGGAGTTTTTTGAGGGCTTGTAGGGCATCCGCCGCCGTTTGAAAGCGATCGCTAAAATGATAGGCTACCATTCGGTCAATCACCTCAGCCAACTCCGGGCCAACCGCAGCCAAATTGCGCCAAACCACGCCCCCCGTCTCTTGATCCTGGCGTAACTGGTGGGGGGCAATACCCGTCAGCGCCTGAATGCCAATCATCCCCAGCGCATAGAGATCGCTACTTAACCGGGGTTGTCCCACCAACTGTTCGGGCGGCGCATATCCCTTGGTCCCAATTGCCACGGTAATATTCTCAGTTTCCGGTTCCCACTGGGGTTGAATTTGCTTAACTGCACCAAAATCAATTAAACACAACCGTTGGTCAGACTCGCGGCGAATAATATTACTGGGCTTAATATCGCGATGAATCACCCGATGTTCGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //