Array 1 8912-9999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH792172.1 Bacillus cereus VD115 supercont1.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 8912 32 100.0 34 ................................ TTTCACTCCATATGGTAAACCACGACTCATTTTA 8978 32 100.0 33 ................................ TGAAAATTTCTTTTGTACCTGGAATGCTATTTT 9043 32 100.0 35 ................................ CATTAGAAAATAAAGAAAGGATCTATCCTCTTAAA 9110 32 100.0 34 ................................ ATAAATCGCTTAACTTCATCCGCTCTATACTTAC 9176 32 100.0 35 ................................ CAAGAAGGTGACGTGTTAATGGATTGGACGGCCAA 9243 32 100.0 35 ................................ TCCAGAGAAGAAATAGACAAGGTACAGCAGGACGG 9310 32 100.0 34 ................................ GAACATAGGGTTAACATTGCTCATGATGCTCTCC 9376 32 100.0 35 ................................ ATAGATGGTGACGGCACTGGATTACAACACATATT 9443 32 100.0 33 ................................ ATTGCTGCTACTGCTGTGGTGAACCAAATAGCG 9508 32 100.0 33 ................................ ATGGTTTCGAATATTATCAAGAATAGCTTTACT 9573 32 100.0 35 ................................ GGAATAGATAAAACCGATACAACAGCAAGCGACAG 9640 32 100.0 33 ................................ TTTGGATTAGCAAATGATGATTACACCGTTGAA 9705 32 100.0 35 ................................ AGAACAATTATTAGTTAGAATCGGAGACCCCGGTG 9772 32 90.6 33 .......T......T.........G....... ACAATTTTATCAAAATAAGAAAAAACTATTTGA 9837 32 81.2 99 ........C...GAG....T.G.......... GTATCTATGTAGGCCCTCCACAATTAGATTGAATGTCGCACCTTTTGCTGAGAGGGAATTGGAATCAGTGTTGCTACGCTCAATGGGAATCCCTAGATT 9968 32 75.0 0 C..T..A..T..GCT...T............. | ========== ====== ====== ====== ================================ =================================================================================================== ================== 16 32 96.7 38 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCACCATTTCTATGGAAGTAGGTGTAGCGGTTGCTAGTATTAATAGCATATGATGTAAGCACTATGAGCCGCGCTGGACAAAAAAGGCTGCGGAAAGTATCAAAAACATGTCAAAATTATGGTCAACGAGTTCAAAATTCTGTATTTGAATGTGTTGTGGATGCAACTCAATTCGCTACTTTAAAAATGGAATTAATTAAGATTATTGACGAGAATGAGGATAGTCTCAGATTATATCAGTTAGGTAATAACTATAAAAATAGTGTTGAACATATTGGTATAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCCCGTACATTCGCACCTAAATTTTCATAATTTATAAATAGAATTTGTGATTTTCCATACAGATTTCTTTATACAATTAAAAAATTGCATACTTTTGAACCGAATTAACGTATTTGTATATGATTTTGAATACAAATCGGG # Right flank : TACATCTTTCTTGCTATAACTCTTTTCCGTGCGAAGATTGAACATATTGGTGTAAAAGAATCAATTGACTTAGAAAGTCCTTTAATTTTTCAGGTGCGAATGTATAGCACACATGAAATCCCTCGTACATTCGCACCTGAATTTTCATAATTTATGATTAAAATTCACGATTTTCTATACAAATTTCTTTATCAAATTAAAAAATTTGCATATTTTTGAACAGAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGTGTCGCACCTCTCGTAGGTGCGTGGATTGAAATAATGTGTTTCATGGTATTCCTCATGCCATTCGTGTCGCACCTCTCGTAGGTGCGTGGATTGAAATTGTACTACAAAATCACCACGCTACCCCAGTACCGTCGCACCTCTCGTAGGTGCGTGGATTGAAATATCCGTCCTAACTTTTGCTAAATCCTCACAAAAAGTCGCACCTCTCGTAGGTGCGTGGATTGAAATACGTATATAT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10261-10884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH792172.1 Bacillus cereus VD115 supercont1.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10261 32 100.0 33 ................................ AATGTGTTTCATGGTATTCCTCATGCCATTCGT 10326 32 100.0 33 ................................ TGTACTACAAAATCACCACGCTACCCCAGTACC 10391 32 100.0 34 ................................ ATCCGTCCTAACTTTTGCTAAATCCTCACAAAAA 10457 32 100.0 35 ................................ ACGTATATATGTTTTTCCTTTGAGAAACCCTTAGT 10524 32 96.9 34 ...........................T.... CAAACAATGTTACCTATCTGGTTACTAAAACGTA 10590 32 96.9 33 ...........T.................... ACTCCTCATTACGTATAAGCCGACAGGTAAACA 10655 31 75.0 34 ....T....T.T..T..-...G.A...T.... CAGTGCTGCTACACTCAGTGGGAATCTCTAGATT 10720 32 75.0 34 C..T..A....T.CT..C......G....... ATATCTTTGTCAACTCCTTACCAAAGCGTAAAAA 10786 32 84.4 35 ...........TA.T....T.......T.... CTTTCAATTTCGCAATTGTATTGTTTTGCGATCTG 10853 32 84.4 0 ...A.......T......C.A..........C | ========== ====== ====== ====== ================================ =================================== ================== 10 32 91.3 34 GTCGCACCTCTCGTAGGTGCGTGGATTGAAAT # Left flank : AGACCCCGGTGGTCGCACTTCTTATTGGTGCGTGGGTTGAAATACAATTTTATCAAAATAAGAAAAAACTATTTGAGTCGCACCCCTTGAGGGTGTGGGGATTGAAATGTATCTATGTAGGCCCTCCACAATTAGATTGAATGTCGCACCTTTTGCTGAGAGGGAATTGGAATCAGTGTTGCTACGCTCAATGGGAATCCCTAGATTCTCTCAACTTTTGCTGGTTCGTGGATTGAAATACATCTTTCTTGCTATAACTCTTTTCCGTGCGAAGATTGAACATATTGGTGTAAAAGAATCAATTGACTTAGAAAGTCCTTTAATTTTTCAGGTGCGAATGTATAGCACACATGAAATCCCTCGTACATTCGCACCTGAATTTTCATAATTTATGATTAAAATTCACGATTTTCTATACAAATTTCTTTATCAAATTAAAAAATTTGCATATTTTTGAACAGAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGT # Right flank : CCATTTTGAGCTACCTACTGCTTAATATATAACATTTCATATTTCGACTCTTATCCTTCTCCAGCTCATCTTTCGAATTTTCTCGACGTTTATTCAAATGAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAATTTTTTAATCATACCCTTTGCAACAAGGTGCAATTATATTTCAGTGTATCCGCACCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAACTCTATTATTCTCTCCATCTATTTTTATTGTATGCACCAACGGGAAGACATATGCACCATCCTCGGTGAATGTGTATAAATTACATTGAAAGTGTCAAAAATAACAGTTAAATAGGATTAAAGAAAGGAAGGCACTTTCATGAAAGGAAAAAAGAAAAACCGTACAAAGCTAGGAAAATGGTTAGATCAAAATGGAATAGAACAACAGGAATTAGAAAATGCAACTGGTGTTAGTCGTAATACAATT # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTCGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //