Array 1 17849-16966 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSVH01000028.1 Escherichia coli strain R14c NODE_28_length_60783_cov_1.426800, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17848 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 17787 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 17726 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 17665 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 17604 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 17543 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 17482 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 17421 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 17360 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 17299 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17238 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17177 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17116 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17055 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 16994 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 121001-119142 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSVH01000003.1 Escherichia coli strain R14c NODE_3_length_129735_cov_1.392869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121000 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 120939 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 120878 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 120817 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 120756 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 120695 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 120634 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 120573 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 120512 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 120451 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 120390 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 120329 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 120268 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 120207 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 120146 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 120085 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 120024 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 119963 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 119902 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 119841 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 119780 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 119719 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 119658 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 119597 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 119536 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 119475 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 119414 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 119353 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 119292 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 119231 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 119170 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //