Array 1 184593-185946 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJOO01000004.1 Streptococcus intermedius strain KLC02 D8827_contig004, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    184593	    32	 100.0	    34	................................	ATTACCCAAATTTTTTAGGTTATCCATTTTTTGG   	
    184659	    32	 100.0	    33	................................	TGAAAATTACATTCATTTTCACATTAATATTAT    	
    184724	    32	 100.0	    34	................................	ACCATCTTCATTTGTAATAATAATGTCGCCGCAT   	
    184790	    32	 100.0	    33	................................	ATCTTTTTCTTACTCCTTATTAAATTCTGGCGA    	
    184855	    32	 100.0	    35	................................	AAAACTTGGGAGCTATATTTTAAGTCACTAGCATT  	
    184922	    32	 100.0	    37	................................	TTGATTCGGTCTAACGCTTTTTTAATCCGTTCCAATC	
    184991	    32	 100.0	    34	................................	ACGAATCGCATCGCGAATCTGTGCGGGATAGCTC   	
    185057	    32	 100.0	    33	................................	AGTCGAACCAGAACAAAAAGAGGAATCAATCCC    	
    185122	    32	 100.0	    34	................................	TTTGAGTCTATCAATGATACTAATATTGATCGTT   	
    185188	    32	 100.0	    35	................................	TTTTTTGCTTCTTTTAGCTTTTGCCTCGTCAAAAG  	
    185255	    32	 100.0	    35	................................	CAGAAAACACGATTGACTTCTGTCACTTCTACCAC  	
    185322	    32	 100.0	    33	................................	AAATAGCGAGAACGCGCTGAACTGTAGAGATTT    	
    185387	    32	 100.0	    34	................................	TAAAAAAGTATAAATTAAGCGGTTGGTTCCCTAA   	
    185453	    32	 100.0	    34	................................	TTTACAATTAGCAGAATGAGTAGAAAATACTGTC   	
    185519	    32	 100.0	    34	................................	CAGTGCCATTTGCGTTGAATACATGCCTAAATCC   	
    185585	    32	 100.0	    35	................................	TGGCGTTTCACAAATTAGGTGTGCAGGTCTACACA  	
    185652	    32	 100.0	    34	................................	ACTTCAATTTTAGAAAACTTGGCGGTTATGGGTA   	
    185718	    32	 100.0	    33	................................	AGGAAAAGTCTTACGGAAGAAAGAAAATCTTTT    	
    185783	    32	 100.0	    33	................................	AAACATTTTCTAAAACTATGCAGCAATACCCTT    	
    185848	    32	 100.0	    35	................................	TTTAGAAACCGAAGTTTCAGGGATAGCACTGCAAC  	
    185915	    32	  96.9	     0	................A...............	|                                    	
==========	======	======	======	================================	=====================================	==================
        21	    32	  99.9	    34	GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT	                                     	       

# Left flank :   CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTACTGCAGGTAGGAGACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT
# Right flank :  TTTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCGAAAGTTAGGTTTGGATAAATAGAGAATCAAACTAACATCTGAGGGCAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAGCAGCTCAACAGTAGAGCTGTTTTTTAACCTATTTGCAAGTTTAAAATTGTGATTGGTCTTGCATTTACGGATGATCAGACATTTAAACTTCAATATTATAAAGATCTGTTGATAAATAGCGCTCCCCGTTATCTGGAGCAAGAGCTAGGACTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGTGCAGCATAGATAGCTGCGGCAGAAGAAATCCCTACAAGAAAGCCTTCTTGTCCACCGACACGGCGTCCAAGGTCAAGCGCTTGATCAGAAGTAACACGGACAATACCGTCATAAGCTTGAGTG

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.00,-5.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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