Array 1 2345899-2343223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052065.1 Lacticaseibacillus paracasei strain 347-16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2345898 36 100.0 30 .................................... TACAACGAAGCCATTCGGAAATTAGCAGCG 2345832 36 100.0 30 .................................... TTGCTCATATTGGAATCAATGTCTTTCGCG 2345766 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 2345700 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 2345634 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 2345568 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 2345502 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 2345436 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 2345370 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 2345304 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 2345238 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 2345172 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 2345106 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 2345040 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 2344974 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2344908 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2344842 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 2344776 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 2344710 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 2344644 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2344578 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 2344512 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 2344446 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2344380 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 2344314 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2344248 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2344182 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2344116 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2344050 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 2343984 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 2343918 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 2343852 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2343786 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2343720 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2343654 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2343588 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2343522 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2343456 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2343390 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2343324 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2343258 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //