Array 1 19790-20181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNBH010000041.1 Vibrio crassostreae strain GV1681 1586100041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19790 28 100.0 32 ............................ TGCAACACTGTTAACGGCTCGCGACTCAATTT 19850 28 100.0 32 ............................ CGTGAAATTCTTTAACAAAGGTGCCTTGGTAA 19910 28 100.0 32 ............................ TTAATTCCTTTTCTAGGAATGTAAGAGCAGCA 19970 28 100.0 32 ............................ CCGAATCAACGAAAGGCTCTACGGCACATCGT 20030 28 100.0 33 ............................ TTTGCTATCGGGAAACTCAACTTGAAGGGTTGT 20091 28 92.9 31 .......G...................C ATAAAGTGCTCTGATTCACCGCGTTTAACGG G [20115] 20151 28 92.9 0 ......................C....A | CCA [20171] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTCACTACCGCACAGGTAGCTTAAAAT # Left flank : GGCAACACCCTAAGTTCAAAGAAAATGAGAAAACACTACAGATGTTACTTAAGTTTGATGGAATAAATGACGCTATGAGATATAAGACTGGCTTAGATGTAAAGGCACCACATGAGATTGAACTTGAAATTATGGAGATTGAGGGGGATGTTCCTGAACCAACAAGGTCACCTAAATTCATGACCCCATTCGACGGGTTTAAGCGCTACACATACTAAAAGCTGAAAAAAGACTCATACAGGTATCAGTGCTTTGCCTGTATGGCTTTGAACCGAAGAGCACTGCTGATCGCTTTACTGTTTCTTACCCATGTTTGATTGCAGTCATCTTGGTATGTTGATATATTCCTTGTGAAAGACAGAAGGGTTTCACCCCTTTTTTTGCTGTAGGTTTTTGGGTGTGTAAAATCAATAAGTTACAGAGTGTCTGCAAAAAAGGGTTATTTTGACAAAATGCAATCAAGTTAATGTTTTGAAAGCGTTTTATGCTTTTTTGCAACA # Right flank : AAAGAGGGTGTAACACCCTCTCTTTTCACCTATTTCTCAAGTCTCTCTTTGTTTAGTTCAGCTCTAAACACTTCGTTCAGCAATTTTATAAACACTGGGTTTGTGCTGATATTATCGCCACTGACACTACTACCTCGAATAAAGTAGCAACCTACTTGCCCAGCCAGCATTGTGCGGATTTCAGGTTTATCCTCTTTGTAGAAAAGTCGCCTGATTGAACTAAATCGCGCCAACGATGTATCAGGATTGAGCTCTAGAGGTACTGCATAGTCATCACCATCATTAAGCCATAGCATGGTCTTAACTACATCATAGTATCCACCTTCCGCCTTAACGCCATTGACCCTCTCAACCTTATGCTTTATAAGGTCTTCAGGTAGTTCAAAGCCGCACACTTCCATTAAAGTGGTCTTGATAGCTTTTGCTTTTTTTGCGCTGTTTTTGTCTTTACTAAACAGGGCTACATCCCTAAGAATGCAAAGCGTCCTTTTTTCAAGGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCACAGGTAGCTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43422-42974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNBH010000041.1 Vibrio crassostreae strain GV1681 1586100041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43421 28 100.0 32 ............................ AATCGCAGTAGGTGTGATCAGGGCAGTAAACG 43361 28 100.0 32 ............................ ACTCTGGAACATTGCGCCTATTGCTACTTGCC 43301 28 100.0 32 ............................ TCGCAAGTATGTTGGTATGCATATCGACATCT 43241 28 100.0 32 ............................ GTCAAGCCTTGTATCTACTTGCTCTAGCTCTG 43181 28 100.0 32 ............................ TATTACAGCGATGGTGGCAGGCAGGTTAATTA 43121 28 100.0 32 ............................ TTACGAGATGTGATTGTTAGTAACTGTTTTGC 43061 28 100.0 32 ............................ CCCGTTTGCACAGCTGAAGACTTGGATTTTAC 43001 28 78.6 0 .............C.........TGGGA | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTACCGCATAGGTAGCTTAAAAT # Left flank : AGCTGAAGTTTGGGGGCGAACACGTACCGCTAGCTGAGATGCTGATCGCCATGACGGTAACGGACGAACATGGGGTTACAGAGTCACCTTTCCTTGAGTCGAGGCGATCAGCGAAAATAAACATCAGTAACCTTGTCGAAAACTGGTCTGGGTTGTCTGTGCGTGAAAGGTTGAGTTACGGTTTAAAGCCGACGGAAGCGGGGGCTGCAAGGCTTCTTTTTGATGAAGTGGTGTCTGTTGAGTGTAAGAACGACGGTGATGTTTTGACATACGGCTCGCTTGCTTATCAGTTTGAGATTTATTCACGTCAAGATAATTGACAGACTTGCGGCGGGTTGATAAATTGAATCGACATTAATCAATGTTTTACCCCTTTTTTTTTGCTGTTGATTTTTGGGTGTGCAAAATCAATAAGTTACAGAGTGTCTGCAAAAAAGGGTTATTTTAACAAAATGCAGCCAAGTTAATGTTTTGAAAGCGTTTTATGCTTTTTTGCAACA # Right flank : AAACCAAAAAAAAGGTCGCTAAAATGCGACCTTTTTTCCGAGCGTCTAATAGCTCTAAACAACTAAATCAGGCAACTGTGTTGCTCAAACTTATAATGAGAGCATATGACTTGATGGTATTCATTGCAAAAGTAATTTGCTCTCACTTTGTTCTAGCTCGGAAAATTGCTAAACTGTTTTAAACAACTAAAACTTATGCAATTTATATTTGATAAAGCTGATTTCAGCTTGTTTCTACGCGGTTTTTTTAAGTCGCATGTAATATCCATCTCCAGAATGCTGTTGTTGTTGCTGTGTATCGGCGCGGTCACAATGGCGTTCGTTTCAATAATAAACGCAGCTATCTTCATCGATTTGTCTCCCGATGGGGATCTTACGCAATCCATCTCAAGCATGATGATCGCATTTTTTGCCGCCCTGTTTGCCATCCCATATAAAATTTTCAGAAAGCCGCTCAAAGCTAAAGCACTTTCGTGTCGAAAGAGCTTCAAGGAGGAGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //