Array 1 415339-412126 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEGL01000001.1 Acinetobacter sp. ANC 4654 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 415338 28 100.0 32 ............................ ATTTCATATACGCTTTTCTGTAAGTACATTCG 415278 28 100.0 32 ............................ CAAGTTATAAAATCACAAACAGGTTTAGCCCA 415218 28 100.0 33 ............................ AGTGATAACGGCCGTTGTTTCTTTTTTTGATAA 415157 28 100.0 32 ............................ ATACATAAAGCGTAAATTTGCGTAAAAATCTT 415097 28 100.0 32 ............................ TTTAAATAAATCCGCATCCATGCGATAGAATC 415037 28 100.0 32 ............................ ATAATTATCTGCCCAATCAAGGTGAGCATTAA 414977 28 100.0 32 ............................ AGTAGCTTCATTTGCTTTTTCAGCAGCAGCTT 414917 28 100.0 32 ............................ TTAAAGTTTATAATCGATCAATTAAACAAGGC 414857 28 100.0 32 ............................ TCTTTACCGCTAATTAATTCACTCACACCGTC 414797 28 100.0 32 ............................ ATGATACTTGGGCTAATGCTGTAATGAGGTGT 414737 28 100.0 32 ............................ TGCTAGTTTTGAAAGCATGGATTGACTCGCTT 414677 28 100.0 32 ............................ AAATCAAAGCGATTTTAGAAAAACCTTAAGGA 414617 28 100.0 33 ............................ TTTCATATAAAAACTTTTAAAGCTGATCTTTCA 414556 28 100.0 32 ............................ ACAAGCCCGAAAAATACAGCAATCGTGCTGCT 414496 28 100.0 32 ............................ ATTAACTTCAGCTTGCTGATCCGCAAGTAAGC 414436 28 100.0 32 ............................ ACCCGTTGCTTGGTGGCTGAATAAATGCGCCA 414376 28 100.0 32 ............................ CATCGGGTGAATAAGCTGAATTATTATATTGA 414316 28 100.0 32 ............................ TTCAAAGTCATCGTAAGCAAGGTCACAACGAG 414256 28 100.0 32 ............................ TTCAGCAACCGCGGCCGCGTAAGTGTCGGGGT 414196 28 100.0 32 ............................ GATAATGTCTGCGTCAGGTTTGATCGCTAGAA 414136 28 100.0 32 ............................ TCGGGGGTAACGTACCAAGGACGTGCCCAGAT 414076 28 100.0 33 ............................ CTGTAAAAAATGTATTTAAGGGTATGAGTGCTA 414015 28 100.0 32 ............................ ACTTTAAGACCTTCTTCGGTGCTCGGATCTTC 413955 28 100.0 32 ............................ AATTTAATTGACGCTGCCCCTTAAAGGCGAAG 413895 28 100.0 32 ............................ AGCCCAAACACTTAGTGGAATAAAACTAAAAA 413835 28 100.0 32 ............................ TTACAATCTCAGCAGAAATATCACCTTGTTTG 413775 28 100.0 32 ............................ TTTTCAAAATTTGGTGCCTGAATATCATCAAT 413715 28 100.0 32 ............................ GTAACAGTTCAGACTGCAGTAAAAGCCATGAT 413655 28 100.0 32 ............................ TTAATTTTAATGACCTGATGTTGTTCTAACTG 413595 28 100.0 32 ............................ ATCATATTAATACGCCATGCAACACCACCCAC 413535 28 100.0 32 ............................ TTATACAGAAACAGTCAATTGAAGAAATGAGT 413475 28 100.0 32 ............................ ACTATAACGGCGATAATCGTTTTGATGGGGCT 413415 28 100.0 32 ............................ TTCTCGAAATTCCCAAGGTGAAATTACTTACG 413355 28 100.0 32 ............................ ATAAACATTATGGCCTTGCAACAATTTAAGCG 413295 28 100.0 32 ............................ AAGCATCGTTGACGTTCAGATTTGGTTTTGTT 413235 28 100.0 32 ............................ GCTTGAGTCTAAAACAATACTAGCTGGAACAC 413175 28 100.0 33 ............................ GTAAGTTGACACACTTTGACCGTAAACCTCACG 413114 28 100.0 32 ............................ AACGGCATCAGCATTCGAATATTCTTTTGCAA 413054 28 100.0 32 ............................ TATCCAAAATGGAGCAACACAATGTCAGAAAC 412994 28 100.0 32 ............................ TATTCGAACGGGAAAAACTTTATTTGCTATTA 412934 28 100.0 32 ............................ AAGGAGACGAAAAACCCTTAAGAGTTACACGA 412874 28 100.0 32 ............................ TTAGAAGTATATTTACAAAGATAGCCAACAGG 412814 28 100.0 32 ............................ GTCGTGTGATCAATGCGGATCGAATGGAGCTT 412754 28 100.0 32 ............................ TAAAAAGATCGGCTAAAGGAATTTAAAAAATG 412694 28 100.0 32 ............................ CTCTGATTACAAGCTCCGATTAACTTCTAAGA 412634 28 100.0 32 ............................ AATTGAGGCTCAACAATATTCGAGTAAGGTGT 412574 28 100.0 32 ............................ TGCAATACTCCCCGAGTTTGGGTCGGTTAAGT 412514 28 100.0 32 ............................ TATAAAAATAAAGGCCAGACAAAGCGTTTTAT 412454 28 100.0 33 ............................ ATTCCGACAGTACCCATTTTTGTACGATTAGCA 412393 28 100.0 32 ............................ TAGAATGTCAGGTGTTATTAAAATGGCTAATG 412333 28 100.0 32 ............................ TACCAACTAACACCTATGAAGGTGTGACCAAA 412273 28 100.0 32 ............................ AAGGGCAGCACCTGCTAGACCACCGCGAAACA 412213 28 100.0 32 ............................ GACCGCAAACTTTATAGTGGATGCCAGCAAAG 412153 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.9 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GCTGATTTAAAAAAACTTGATCTTAAAAAATGGTTAGATCGATTAACTGATTATGTGCACATCACTTCTATTCGAGAAGTGCCAGAGAATATAAAAAGTTATGCTATTTATAAACGTAAGCAAGTGAAAACCAATGCTGCACGTTTGGCGCGCCATCGCATAAAACGCGGTGATATTGGTTTTGATGAAGCTTTGGCTCGTTATAGCAATGTTGTTACAACAACGGATCTGCCATTTGTTCAAATGAAAAGTTTAACCTCAGATCAAATGTTTAAACTTTTTATAGAAAAGCAGAATAGTGAAAAATTGGACAAGCAAGCTTTTAGTACTTATGGATTAAGTTCAGAGTCATCTGTACCTGAATTTTGACCCAATATTTTTTCACTCTTTAACAGCTTAATAAAATCAATGAGTTATAAAGGTGAGTCGAAACTTGGGTCTTTTATAGATTTTTAGGTTTAACTCGCTGTTATAACTTAATTTTTTGCTATAAAATTACT # Right flank : TTCATCAAAGCTCATGTTAGAACTTAAAGCTATCAGGAGCATTTGGAATAAGATGAATGAGTTTTACTCTAAATAGGAACAGGTCGATTCAATAATTAAAAAATTAGATTTAATAAAGCCAGTGCATGACATCTGTGCGGAGTTTCTCACTTACTATATATTTTTTTGTAAAATATATTCCCAAATGAGATAACCTAAACCGAATCCAATGAATGCATAAAGTGTGATGATGAAGAATACAAAACTCGCTTTATTTTTCTTTTTTAATGAATTCATATTGATGCCCACTGCTTAGCCTTTAAGATAACATCATTATGTCGAGTTTAGCTTTAAAGGTGTAGATACAAAAAATGATTAAAAAAATATAACAGATTTATGTGTTTTTATTCATCTGTTATAGTTATGTGCATATAAATCCAACAATAGAAATTATAAAATACTGACTTTTATGAATCAATTGAGGCTTTAAAACAGATAAATTATGATCGTACAGGAGGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 304690-304419 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEGL01000006.1 Acinetobacter sp. ANC 4654 Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 304689 28 100.0 32 ............................ ATACACCAAGAGTCTATCCATGGTTTTACAGA 304629 28 100.0 35 ............................ ACCTGAAGACTGGCGTGAAGTTCCTGAAGATTCAG 304566 28 100.0 32 ............................ TCAAGACTTAGGTGTAATGCCAAGTCTGTATA 304506 28 100.0 32 ............................ TTTAGAATTAACACAAAGCGATATTGCGGTAC 304446 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ =================================== ================== 5 28 99.3 33 GTTCACTGCCAGATAGGCAGCTTAGAAA # Left flank : CAATATTTTCTTCTACATAGGCTATTTGACGTTGTAAATTGCTTATTTCAATGGTGTCGGCATCAATTAGGGTGATTTTCCCCACACCTGCGCGTGCTAATAGTTCCGCACTTGTACAGCCTATGCCACCACAACCCACTATAAGGACATTGGCAAGTTTAAGTTTTTCTTGTGCTTCTATATCCCAACCATCAAGAAGAATTTGGCGTGAATAAAGGTGCATTTCATCATCATTTAACTCTAAGTCCATGTCGAGTAGATTAGTCACTAAGTTGTCCCACTTGCATTTGCTGATTTATAACCTGCGTAGATTATAAAGGATATCCTCTTTCTGTTCTGTAGAAGTCTTTGACAAGAACCCTTTTTTACCCCAATATTTCAAGCACTCTTTAACAGCCCTATAAAATCAATAGGTTACAATTTTTAAAAAAACTTTGGGTATTTTGCATTTTTTGGCATTAACTCCTTGTTATTTTAAAGCTTTGTCCTTTATATTTACT # Right flank : ATGATTAACCTTAAAAAAACCGCCCTAAAGAACGGTTTTTAATTTAACAATAATAAAATGCTCTTAGAAAAGGCAAAACCTAATTAACCGACTTTTTGAATCCCTTGTATTTTGGCAATTTCCTGTTGTTTCAATAAATTTCGCTGAATTTTTCCACTTGAGGTTTTAGGCAAACTTTCTACAAATTCAATCTCTTTTGGATAAGCATGCTTAGATAAACGCGAACGTACATATTCTTGCAATTTATGACTTAACGCATCCGAAGCTGAAAATTGAGGTTTTAAAACCACAAAAGCTTTAACGACTTCAGTCCGTTCTGGATCTGGCTTACCAATCACAGCAGATTCAAGAACTTCACTGCATTCCAGCAATGTACTTTCTACATCAAAAGGACCTACACGATAGCCTGATGTTGTAATGACATCGTCAGCACGACCGATAAAGTCAACACCACCTAATTCATTCAATCTAACTGTATCACCCGTTAAATAATAATGACC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCAGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCAGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //