Array 1 161107-160833 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000009.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_9_length_161142_cov_24.667310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161106 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161045 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160984 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160862 29 93.1 0 A...........T................ | A [160835] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTGGATAAAACGGTGTTCATATTTATTGGTGC # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000105.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_105_length_225_cov_20.581633, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 99 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGAAAAAAGGAACACACATGGCCTTAGAAGATGAG # Right flank : ACGCGATGTCGGTACATGATATGACCACAACAGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 372-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000055.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_55_length_995_cov_13.593318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 371 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 310 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 249 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 188 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 127 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATTACTACCGGGCTAACACAAGTGGTAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCGCGCCAGCGGGGATAAACCGACTCAGGCGGAGAACTGGCCGCATTAACTGTT # Right flank : GCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000055.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_55_length_995_cov_13.593318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 898 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 837 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 776 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 715 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 654 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 593 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTGGATAAAACGGTGTTCATATTTATTGGTGC # Right flank : AAATTAGATGATCTGGACAACTGCCCGCAATGGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCGCGCCAGCGGGGATAAACCGACTCAGGCGGAGAACTGGCCGCATTAACTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGCCGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCAGCTTGCGGAAAAGATCCGCACTGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1739-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_8_length_191514_cov_24.927748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1738 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 1677 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 1616 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 1555 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 1494 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 1433 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 1372 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 1311 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 1250 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 1189 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 1128 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 1067 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 1006 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 945 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 884 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 823 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 762 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 701 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 640 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 579 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 518 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 457 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 396 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 335 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 274 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 213 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 152 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 91 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20228-18246 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEF02000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain HIY0014 NODE_8_length_191514_cov_24.927748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20227 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 20166 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 20105 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 20044 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 19983 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 19922 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 19861 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 19800 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 19739 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 19678 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 19617 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 19556 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 19495 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 19434 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 19373 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 19312 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 19251 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 19190 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 19129 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 19068 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 19006 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 18945 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 18884 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 18823 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 18762 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 18700 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 18639 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 18578 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 18517 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 18456 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 18395 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 18334 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 18273 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //