Array 1 467139-468935 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT615367.1 Dickeya aquatica strain 174/2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 467139 29 100.0 32 ............................. TGTATGAAGGTGTCAGTTTGCCGCCGTGGTTG 467200 29 100.0 32 ............................. TAGCCGGATGGATTTCTGGTAAAACGCGGGCA 467261 29 100.0 32 ............................. GGTTACGGAAGGGTAATGTCCAGCAGTTCAAC 467322 29 100.0 32 ............................. TTCCTGCCGGGCTTTATGTCGGATTTGGTTCT 467383 29 100.0 32 ............................. GCATCGTCTACATCGGCCTGGATGCGTTGTCA 467444 29 100.0 32 ............................. GGTTGGTCGTGACGATATGCGCCTCGTCTATC 467505 29 100.0 32 ............................. GAAAAGATGACGACAGAAAGGACACATTTGAG 467566 29 100.0 32 ............................. CAGATTCACCCGCCGCCGGTGCGGAATTTTCC 467627 28 96.6 32 .....-....................... CGCTCCCGATTTACTGCGCCAGACCATCGACC 467687 29 100.0 32 ............................. TCAACACTGGTGCGGTGCTGGCCCTGCGTCGT 467748 29 100.0 32 ............................. ATGCAGCTATCAGGCAACCCGCGCTTTGGACG 467809 29 100.0 32 ............................. CGCCCATGAGCCGGACGAAGGCGGAAAAACGC 467870 29 100.0 32 ............................. ATGATAGGCCAGGGTGAGTGGTGGCGCGGTAT 467931 29 100.0 32 ............................. TTCACGAGAAAACATCAACTCTTCCGCTTCGG 467992 29 100.0 32 ............................. TTTCAGCTTCATCAGACGAAAACACATCGACG 468053 29 100.0 32 ............................. CGGTGCTGCTTTTCCCGTTGTTTGGGATCGGA 468114 29 100.0 32 ............................. GTATAGGACTTCGCATCAAGCGCCGCGCCAAT 468175 29 100.0 32 ............................. GTTGTGATGATGCAATCTCCGCAGACTGCACT 468236 29 100.0 32 ............................. ATGATAGGCCAGGGTGAGTGGTGGCGCGGTAT 468297 29 100.0 32 ............................. GTCATATCGTTTTTTTCCCTCGGTCTTGACCA 468358 29 100.0 32 ............................. TGAGCACGGTGATAATTGCAGTAAACAATGCT 468419 29 100.0 32 ............................. ATCGAGTTTGATATTAAGGCTGCCAGCGATAA 468480 29 100.0 32 ............................. ATACGGTGGAACTGGTCAATCGCTGTCAAAAA 468541 29 100.0 32 ............................. TCCCGGCTCCAGGATATTATCGCTGATGCCTA 468602 29 100.0 32 ............................. GTGCAAATCATAACGGATAACGAGCGCTGGCA 468663 29 100.0 32 ............................. TTCGGGTTAGTACCGCCGTTGGGGGCAGAAAA 468724 29 100.0 32 ............................. CTCGATTGCAGTTTGTACCGCTTCAATAGCGC 468785 29 100.0 33 ............................. GGGTACGCTATCGGTTTCAACTGGCACGATGTC 468847 29 100.0 32 ............................. TCACGTTATGGCCAGACGTTTGATGCCATTTA 468908 28 86.2 0 .....................-....AAA | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGTGAAATTGAACCGCCGCAGGCACCGCCGGACGCACAACCGCCCGCCATTCCCGAACCGACGCCCTTTGGCGACGCCGGGCACCGGGGCCATGGCGGATGAGCATGCTGGTGGTGGTAACAGAAAACGTGCCGCCGCGCTTGCGCGGCCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGGGTGTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTCGGGTTCCAGACTTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGCCTGCGGTTAGTCTCTTTTCACCCGGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCAGTCTTTAAAATACCTTATAAAACAGGTATCTACTTTTAGA # Right flank : AGAGAAACCCGATGACGGGCGGTACGCGTCATCGGGTTTTTGCTTATGGAACTGCGTTACGCAGGCTGACGATTAAAACGAGTGCCAGTCATCTTCGCTGTTTGCGGTTTTACGCGATGAGGCGGCCGGTTTTAACGCCAGTGTTTTGGTGGCGGAGGCCGGTTTTACCGGGGTACTGGCAAGCATTGGCCGGTTGCCGGAGGCTCGATAAGCGCCGTGCCCGGCTTCTTCCAGATGGAACAGGCTAACCACCTGTTTTAACTGCTCGGCCTGTTGCTGCAAGGCTTGGGTGGCATCGGTGCCTTCTCGCACCAGCGAGGCGTTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGTTCCTGACTGGCAACGCTGATTTCACCGACCAGTTCGCTGACTTTGCGCACGCCATCGACAATGCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTACCGGCATCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 712303-713673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT615367.1 Dickeya aquatica strain 174/2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 712303 29 100.0 32 ............................. ATAACTATTCGCCGTGATATGTGCAATATCGC 712364 29 100.0 32 ............................. CGCCCTTCGGGTAACCAGAACTTAAAGTCGGC 712425 29 96.6 32 .....................G....... GCATGATTCGGATAAAGCTACAGATAGCAGAG 712486 29 100.0 32 ............................. GTTGGCGGAGAGGAGCCGCACCCGCTTAGTGC 712547 29 100.0 32 ............................. CGTGCCAGATGAACGCATCCCCTGATACCAGT 712608 29 100.0 32 ............................. AGCCTCTTCCGCTGTGGCAAAACGAGAGGGTG 712669 29 100.0 32 ............................. GTAAACCTCATGACTGACCTCTATTTAACAGC 712730 29 100.0 32 ............................. TCATTTCGAACACTCTACCAAAGCTGATGGCG 712791 29 100.0 32 ............................. GAGCGCCGCAAAACGTTGATATCAGCAGCTAT 712852 29 100.0 32 ............................. TGTACGAGGGTGTTGTAAGGCTGACGAAAGAC 712913 29 100.0 32 ............................. CGTTTGAAAAATGGATTTCTGAGAACAGCGAG 712974 29 100.0 32 ............................. CACGGGCAATTCTCAATCCTGACATTCACGCC 713035 29 100.0 32 ............................. GCACGGGTAAAAACTTCCGCGATGCTGACTAT 713096 29 100.0 32 ............................. GCTGACGAAAGACGGCCAACGCGTTCGTAACA 713157 29 100.0 32 ............................. TCATATTTTTCCCAATCCCTGCGCGTGGCGCA 713218 29 100.0 32 ............................. GCTGACGAAAGACGGCCAACGCGTTCGTAACA 713279 29 100.0 32 ............................. TCATATTTTTCCCAATCCCTGCGCGTGGCGCA 713340 29 100.0 32 ............................. CGGTTTCGGGCCTGACGGCTAGAGTCTGATGG 713401 29 100.0 32 ............................. GTGGCGGGACTGCACACACGCACCCGAGTTTC 713462 29 100.0 32 ............................. GGGTATGAGGATGTTACGGCCACAACTGAGGC 713523 29 100.0 32 ............................. TTCAAAAATGGCGAGATGTACACCGCCGAATT 713584 29 96.6 32 .............A............... GCAGGTGTAATCGGTGCCCGGTTGGGGCTAAA 713645 29 89.7 0 ...........AT...............A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAATAGCGGCGGAAAATCGTCAAGTGTGGCAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAATTGCTTGATGCGATATTCCCATTTTAGTGCCGTTGAGCGATCGCCCGCCACACAGTAATACACCAGCGTCAGCGGCCCCTTGCCGCGTAATGCCCGCGCCCCTTTTCCGGCCTGGTGCTGTGCCAGCCTGCGCGCCACATCGGTGGTGATACCGGTATAGAGCGCTCCGGCCTCGGTGCGGAGCAGATATAAGAACCATATGCTGTCGCTGCTGTTCACGTCATTTCCTTTTCGTGGTTTAGCGCCTATTTTACGGTGACAGGCCGATACAGGCTGCCTGTTTGACGCCATTTATCGGTGGCAGCCGGTGAGGTACATCACGGCCTTTATTTATCAATAAGTTAGTGTTCTTTAACAACATGAAAAAGTGGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : ATCGACCGTGCTCGCCATATTACCTCTTTTTTGTGATAATATTCACAGTGATGATGTTTTATGTGTCTATTGTTTCTTTTTTATGTGAATAAAAACACAAAAAACAGCGGGCGATCGCGGTGAAATACCGTATCGCTTAAAAAAACCTATCGCGCCCAATGTCTCGGCGTGACCAAAAGCGGAGTGTTGTATGAGTGAACTGACCATAATGGCGCAGCGGGCGCTGGGGCTGATGGATTTAACCACCCTGAATGACGATGACACCGAAGAGAAGGTGATCGCACTGTGTCGTCAGGCCAATAGCCCGGCAGGTAAAACGGCGGCGATTTGTATCTACCCGCGTTTTATCCCGCTGGCGCGTAAAGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGCATCGCCACCGTGACCAATTTTCCTCACGGCCGTGACGATATCGCTATCGCACTGGTGGAAACCAATGCCGCCATTGCCTATGGCGCGGATGAGGTGGATGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3676544-3675209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT615367.1 Dickeya aquatica strain 174/2 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3676543 28 100.0 32 ............................ GATGGCTGACCACGACGATGGCCCGGACGCCC 3676483 28 100.0 32 ............................ ACCAGCGGCCACTCCTCCGGCCTCCTGATGCC 3676423 28 100.0 32 ............................ ACACTGCAAAGCCACGCCAAATATCAGAGTGT 3676363 28 100.0 32 ............................ GGAGTTAGCTGTCGGCATTCAGTCGCCCCCAA 3676303 28 100.0 32 ............................ GAGCACCGGATGCAGGTGATGCAGCAATTTGG 3676243 28 100.0 32 ............................ ACCAGTTTTCCCGCAGACTGTGGCAGGTCGAG 3676183 28 100.0 32 ............................ TTCGCCTCAAAATAACGGATCGCCTCCTCGGG 3676123 28 100.0 32 ............................ GCACGTTGCCATCACGCCTGTATTGCCGTCGG 3676063 28 100.0 32 ............................ GTGATGCGTCACCATCAGCTGAAGGCGCACAA 3676003 28 100.0 32 ............................ TCGACGCGTTGCGGGCGATGGCATAAAGGGGG 3675943 28 100.0 32 ............................ TCGTCAGCCTGCAAAGCAGTGGCCGTCCCCTA 3675883 28 100.0 32 ............................ CGAATCGAACGGAGCATTTAGCTGCGCGTCGC 3675823 28 100.0 32 ............................ ACCGCCGATGGTGACCTGCTCCGCGATGACCC 3675763 28 100.0 32 ............................ AGTTCCAACGCAGTTCACGGCCGATTCAAATA 3675703 28 100.0 33 ............................ GTTGAGGCTGAACGCCAAGACGACACGCTGGAT 3675642 28 100.0 32 ............................ TATCCCGGCACCGATGCTCATTAATAGCGGTT 3675582 28 100.0 32 ............................ TGACTGTTAAAGTTTTTCGCCATCTGCGTGAT 3675522 28 100.0 32 ............................ TGCGGGGTAGGCTGATATGGCAGATAAAAAAC 3675462 28 100.0 32 ............................ TACGCATTCATCAGCAGCCAGGCCACTGGCGC 3675402 28 100.0 32 ............................ GGTTCGTGCCCGGACACCGCTGGAGCCGATTC 3675342 28 96.4 32 ....................T....... GGTGCCGCAAATGCCTGACATCCGGTAATGCG 3675282 28 92.9 18 ...........A.T.............. AGTCAATGATTAGCTGCG Deletion [3675237] 3675236 28 67.9 0 TGATG......AT.....C.......T. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.1 31 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACTGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGACGCACTGCCGGTACCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACACACCGGTCGCCGGTGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCAGAAAAACGGCGGTTTTTCTTTAACAATCAGGAAATAAGCGATTATTCGCTACA # Right flank : CGCCCTGCCAAGCCATAGCGGGCACGGCCGGACAGGCAGGCGCAGGGGCGGTGTATGGTGGGGTTGTGTTATAACAAGCAGGGCGAGGCGGTGTGCGTCTCGCCCTGACTGGCGGTGGCGTTAGCCGTTATCTGTTGCCAGTGCGGAGGTTGCCTGTTTGCGCTGTTTGATGGCGTAACCCGCCCCCAGTGCCAGCAGCCAGAAGGGGATGAGCCAGACGGAGATTTGAATGCCCGGCGTCATCGCCATAATGACCAGAATCCCGGCCAGAAACAGCAGGCAGATAAGGTTGGTGAGCGGGTAGCCGAGGCTTTTAAAGCGCGTTTCCTGCCCGGTGCGCTGTTTGGCCTGGCGGAATTTCAAATGAGTGATACTGATCATCGCCCAGTTAATCACCAGCGCGGAAACCACCAGCGCCATCAGCAATTCGAAGGCCTTGCCCGGCATCAGGTAATTAATCAGTACGCACAGTGCGGTAGCCAGCGCAGAAACCCCAAGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3719890-3723131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT615367.1 Dickeya aquatica strain 174/2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 3719890 28 92.9 32 ...........AG............... ATGCTTGCAACGCATCGATTGCAGCATCACCG 3719950 28 92.9 32 ...........AG............... TATCCCCACATTTCGATTGGGAGACTCGCAAA 3720010 28 92.9 32 ...........AG............... ATAAGAACACCGCTTGACGAATAAACAGATAA 3720070 28 92.9 32 ...........AG............... TGCTGAGCCTTTCATGCGTAAAAATTCTGTGT 3720130 28 92.9 32 ...........AG............... CATATGGCCAACGGCCTGATCCGCCTGCACTC 3720190 28 92.9 32 ...........AG............... AGAATGCCGGTGTGACGGTTAAAGCCACCGAC 3720250 28 92.9 32 ...........AG............... GAGTGTAACCAGCGCATACAACAGCCGGTTTT 3720310 28 92.9 32 ...........AG............... ACTGACGTCATCGCCGTAATCGTTGCCGTTTT 3720370 28 92.9 32 ...........AG............... ATCGCGTACAGTTATTGACAGAACTCCAAGGG 3720430 28 92.9 32 ...........AG............... ACCTCGACAGTCAGGGGATAACGCCAGTTCGC 3720490 28 92.9 32 ...........AG............... AATGTCGCCACAGGCATCAGCCAGTCTGCGCT 3720550 28 92.9 32 ...........AG............... AGTGCCGGGTAACTGGCGGCGATAATGTCCAG 3720610 28 92.9 32 ...........AG............... GCTGATGCGGTGATGGAGAGCGACAGCGCACT 3720670 28 92.9 32 ...........AG............... GGTCAATGTGGTAGACCTGAAAATACCCGGCA 3720730 28 92.9 32 ...........AG............... GCGCTTCACGAATATGCACTCGTACAGGTTGG 3720790 28 92.9 34 ...........AG............... GAGAAATCGTTCACTGCCGCACAGGCAGCTTAGA 3720852 28 92.9 32 ...........AG............... GAGCGAAAAAAACTTGGCCTGTCGCAAGCACA 3720912 28 92.9 32 ...........AG............... AGCGTCTGGCTGACCGACGGCTCTACCGTGAA 3720972 28 92.9 32 ...........AG............... TGGGTATCGTCCAGCACCACGTCCGCCGGGGA 3721032 28 92.9 32 ...........AG............... CATTCCCAGCCGGTTCGGAACGAATGTCTGAA 3721092 28 92.9 32 ...........AG............... ACACACTGACCGTTCCATTGCCTGCTGCGGGG 3721152 28 100.0 32 ............................ GTCACTACTCTGGAGACTGCCAGCCAAAAGAC 3721212 28 100.0 32 ............................ GCTGGAAAACCTGCTGTTACGCCAGCGCATCA 3721272 28 100.0 32 ............................ TGAAGGATGGCTTCGAAGTCCAGCACTTCGAT 3721332 28 100.0 32 ............................ GATATCCAGCCGAAATGTGCCGGGCGCATCGC 3721392 28 100.0 32 ............................ CGAGGACTTTTTGCAGACGGGCAATGCGGTTT 3721452 28 100.0 32 ............................ CTGAGCTAACCATATATCTAACCAAAGATGAT 3721512 28 100.0 32 ............................ ATCTTACAACCTCACTTGAATTTATTTAATAT 3721572 28 100.0 32 ............................ ACGCTTCCACACGATTTTATCGTCACGGTCAA 3721632 28 100.0 32 ............................ ATTAGCAAAAACATCGTGTTCACTATTTACCC 3721692 28 100.0 32 ............................ TCAGCCGCTCTTTCCTGTGTCCAGCCCAATCC 3721752 28 100.0 32 ............................ ATCGTCGGCGCTGCGGACTTGGCCGGTGGCAC 3721812 28 100.0 32 ............................ ATCAATATGATGGGCCGCGGACTGGCGCTGAA 3721872 28 100.0 32 ............................ TGCCAGAGGGGCTGTCTGTCGGCGGCTACCTC 3721932 28 100.0 32 ............................ GAGTGTCGCGAAATCGTCGAGGTATTAAATCG 3721992 28 100.0 32 ............................ TGATTGCGTGTCAGATTAGCCCCGATCAGCTC 3722052 28 100.0 32 ............................ TGATGCCATTCAGAGTGAATCCGACGATGTTC 3722112 28 100.0 33 ............................ GATGTGCAGGAAACTGTCTGGCCCGCTGAGGTT 3722173 28 100.0 32 ............................ TACAGGGGCGGTTCTTGTGAGCTACGCCGGGT 3722233 28 100.0 32 ............................ GCCCGGAAGGCTCCATGCCAGACCTGGTGAAA 3722293 28 100.0 32 ............................ ACGCATTACCGGCACGACAGCATTTCCGTCGT 3722353 28 100.0 63 ............................ CAGTGTTGTACCCGACACCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAACGA 3722444 28 100.0 32 ............................ GCTGGATGCAACAGTCCTACCTACCTACAAAA 3722504 28 100.0 32 ............................ TTTACCATGACGATACACCTTACTCAGCACTC 3722564 28 100.0 32 ............................ GCGATAGCGGCGAATGGGTCATCATTCCGCCC 3722624 28 100.0 32 ............................ AGATTAACCGCTAAAATATCGCAATGAATCCC 3722684 28 100.0 32 ............................ TTCAGCTCGCGAGGTCAGTGAGTTCAAATCAG 3722744 28 100.0 32 ............................ GACAAATTCAATCGCCGCTTGTGCTGCTGCGG 3722804 28 100.0 32 ............................ AATAGACGTGTGGACGAACGGCGACGGCGGGA 3722864 28 100.0 32 ............................ CAGTTCGCGCCGGGCAATACAGCGGTGATGCC 3722924 28 100.0 32 ............................ GACGGACATTATGACCGGCAGCGCTGAGACGG 3722984 28 100.0 31 ............................ TGTAAATCTCTTGTGATATCAGAGATTTTTT 3723043 28 92.9 32 ...........AG............... GATGATATCCACCAGCACATAATGTTCGGCCC 3723103 27 85.7 0 ............G..........-..CG | GG [3723124] ========== ====== ====== ====== ============================ =============================================================== ================== 54 28 96.8 33 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCTATCCGCGTAATAAAACGCAGACTAATAATTCATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCAAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGCCAATTGCGGGCAGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGTGTTACTGGCGTTAAAACTACGCTGAGGTGGGCAACTTCGCCGGATGCACGGCATGGAGGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCCGCAAAGAAACAATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAAACCTCACTATCTAACGCCCGGGAAAGGACAATATCAAAACGACGTCCAATCACCATTGCTACCCGCCACCGCCGCCGCCCGTTTTTCCGGCAGCGCCGGAGATAACATCGCTGGCTGACGGGTTGGCGACGTTGCGCCGCTGTTGCCTTGCGGCATCAGGCGAAATGCGCTGACCGCCTCGGCCAGCAGCGAGGCTTGCGACTGTAACGACAACGCGGCAGATGCCGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //