Array 1 866-1033 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIUH01000117.1 Neisseria meningitidis strain N191_16 NODE_117_length_1086_cov_46.8298_ID_233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 866 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 932 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 998 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : GAGCATTGACACTATTTGTATGGCGTTAAGGTTGTAGCTCCCTTTCTCATTTC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 23280-23109 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIUH01000038.1 Neisseria meningitidis strain N191_16 NODE_38_length_23330_cov_30.5342_ID_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 23279 36 100.0 33 .................................... TTTTTTCGATTTTTTTATATTGATGCGTTTTTG 23210 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 23144 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 3 36 100.0 32 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCACTTCGCAGTGCTACAATTAAATTTTTGATTTTGATTTTTCCTTTATC # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1642-1400 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIUH01000034.1 Neisseria meningitidis strain N191_16 NODE_34_length_25324_cov_33.3023_ID_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 1641 26 100.0 50 .......................... CGGCTTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 1565 26 100.0 42 .......................... CAGACCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 1497 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1425 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== ================================================== ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : TAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //