Array 1 348960-350980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTF01000017.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 348960 28 100.0 32 ............................ GGGTCAGGTAGCCGTCCAGGCCGGCGAGATCC 349020 28 100.0 32 ............................ CTGAACGCGATTCGGGAAATCGACATTGAACA 349080 28 100.0 32 ............................ AGATTCGAAGCTATCAGGCCTACCGTCACCAA 349140 28 100.0 32 ............................ TGGACGCCGACAGCCGCTACGCCAAGATGGTC 349200 28 100.0 32 ............................ TTCATGGGGATGAGTCCCGCGCAGCGGGAGAT 349260 28 100.0 32 ............................ ATGGAGGCCACTAATTCGCGGTACATGATCCG 349320 28 100.0 32 ............................ ATCAGCATGTCGAGGCCATAGCGCATCTTGTG 349380 28 100.0 32 ............................ CAGTTCTGGCGGCGGACCTTCTCCCTTGATGT 349440 28 100.0 32 ............................ AGATGGAAATACCTCGCTCGTCATTCCAGGTG 349500 28 100.0 32 ............................ TCGTCGTTCCACCGCTCGCCGTTAAGCCAAGT 349560 28 100.0 32 ............................ AATTCGGCGCTGAGCTGATTCGTCACCTGGCT 349620 28 100.0 32 ............................ TGAAGAACGTGGATCGTCAGTACGACGACCAG 349680 28 100.0 32 ............................ AAGGTCGTCCGTTCGGCAATTCGCGTGCTCCG 349740 28 100.0 32 ............................ TGCAAGCCTCGGTCAAAGACACTGAGGTACTA 349800 28 100.0 32 ............................ TATGTCCGTCAAGTGTTTGGCGGGGACTATCG 349860 28 100.0 32 ............................ TATAGGAGAGATCAGCGCTCGGAGGCATCTCT 349920 28 100.0 32 ............................ ATCCAGCACGAACACCATCTGTGTAGGTTTCC 349980 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 350040 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 350100 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 350160 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 350220 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 350280 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 350340 28 100.0 32 ............................ ATGCAGAGGCGGTCGATGCGCGGCAGCTTCAC 350400 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 350460 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 350520 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 350580 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 350640 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 350700 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 350761 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 350821 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 350882 28 64.3 43 ..................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 350953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================== ================== 34 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54190-55119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTF01000040.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54190 28 100.0 32 ............................ ATCGGCGCCAGCATGGACGAGCGTATCCAGGG 54250 28 100.0 32 ............................ GACAGCTACCAGGTCCGACATATCAACGCGCA 54310 28 100.0 32 ............................ GGGAACAGCGTCTTGCTGTTGCACCGCCGCAC 54370 28 100.0 33 ............................ ACCGGCTCCTGCCTCTCCAGCTCCGCGACCCTG 54431 28 100.0 32 ............................ TGGAAGCAGGGCCAGGATGTCGCAGTCCATCA 54491 28 100.0 32 ............................ GCTGGCGCCCTGGTCTGCGTCGTTTGCGATCT 54551 28 100.0 32 ............................ ACTTCGTGCGTGAACTCCAGTCGAGGGGATAC 54611 28 100.0 32 ............................ AAGGACACCAACCTGGTGCCGGCAAACTTCGT 54671 28 100.0 32 ............................ TCATTCCAGACCATGGCCGCTCACTACTGAGC 54731 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 54791 28 100.0 33 ............................ GTCCTCGATCAGCTTCGCGGCGCGGGCGGTGTA 54852 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 54912 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 54972 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 55032 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 55092 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64802-63993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTF01000040.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64801 28 100.0 32 ............................ AGCTGAAGGTCGCCACCCCCGGTAACCCCGAC 64741 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 64681 28 100.0 32 ............................ TTGACGCCCAGGGCGCCGACAAGGACCGTCGC 64621 28 100.0 32 ............................ TCCTCCAGAGGATTGCATCAAGGGGCTGACGG 64561 28 100.0 32 ............................ ATCTACCCGCAAAGCAAAGCCCCGCGGACCGA 64501 28 100.0 32 ............................ AACGCGTCCAACGTGCTAGCCAAGGCCACCCG 64441 28 100.0 32 ............................ AGTGATGGAAAACAGCGCCGTGACCCAACCTG 64381 28 100.0 32 ............................ AATCCCGACTTGGCGTCGTTGATAGCCACCTC 64321 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 64261 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 64201 28 100.0 32 ............................ AGGGGGGGGTCGGCAGGCAGACTCACCAGCAG 64141 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 64080 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 64020 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGCCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //