Array 1 870-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUV010000002.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0993 NODE_2_length_389893_cov_57.519555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 869 36 100.0 30 .................................... TTTTCGTGGGCGCTATGTCCTGGATGAAGT 803 36 100.0 30 .................................... AATTATCTTAGCGGGCGATAATGATGAAAA 737 36 100.0 30 .................................... ATTAAAACCATTTATGGGATAGGTGAACGA 671 36 100.0 30 .................................... AATTAACTGCTCTGTACTTGAAACGGATAA 605 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 539 36 100.0 30 .................................... GAAAAAGCGAAAGAATGTAACATGTCTGTA 473 36 100.0 30 .................................... TTTTTCTGCGGCGCTTGAACCATCCAACGC 407 36 100.0 30 .................................... GCTTTCGTTCTTCTTAATCGTTCAGCGAAT 341 36 100.0 30 .................................... TATTAAATCAATTACAGAGGAATGCGGCAA 275 36 100.0 30 .................................... TTCTAAAGATTTGATTGCTGGTAGTGATTT 209 36 100.0 30 .................................... TTGCCATTGGTTTATCAATTCCATACTTAC 143 36 97.2 30 .................A.................. TAGCGCATCTAATCAAATAAACACTGTACA 77 36 97.2 0 .................A.................. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : CTAGCGCATCTAATCAAATAAACACTGTACAGTTTTAGAGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 135075-134725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUV010000003.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0993 NODE_3_length_335203_cov_47.443018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 135074 29 100.0 36 ............................. AAATCTTGTTTTTGTCAATGAGTTCAAAGCTGAAAC 135009 29 100.0 36 ............................. GTCAATATTAAGACTCGGTACAGTCATGTTTTTAAG 134944 29 100.0 35 ............................. ACATATTTAAGTACATCTTTAAATCCACTGCCGAC 134880 29 100.0 35 ............................. CTTTCCGCAAGAAATTATCAATTAAATTTCTTGCT 134816 29 96.6 34 T............................ TTCTGCTTAGACGTAGCTGTATCAGCAGCCCAAT 134753 29 86.2 0 .......T.......CA......A..... | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 97.1 35 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACTACTTCGGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAGTAATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCCATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGTTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTCTGTCGACCTTGGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGATTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGAGTGGATTTTCGTTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTTCAGATACAACTCCACCACCATCCATCAAAAACCAAAAAAGAGTGACTGCCAAACTCGCAGTCACTCTTCTTTTTAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTTTCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAAACTTCTACTTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 5868-5633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUV010000014.1 Listeria cossartiae subsp. cayugensis strain FSL L7-0993 NODE_14_length_5927_cov_62.410256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5867 36 100.0 30 .................................... AAAAAGCTATAGCAGATGCAAACGCAACGT 5801 36 100.0 30 .................................... AGGTGTTTCGGTTAATATGCAATTTATCCG 5735 36 94.4 29 .................A................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5670 36 83.3 0 ......A......A......A..G....G......G | T,T [5636,5638] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GAGCTATGTTAATTTGAATGCTAACAAAACTAGCGCATCTAATCAAATAAACACTGTAC # Right flank : AAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAATGATCTAGATTTCTTAAACTTAAATTTCGAGGCAAACATCGACTGTGATACAAAAGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAAAATCTTCCTTTAACAAATAAAACAGAATTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGATAGAGAACT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //