Array 1 861145-859756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014034.2 Vibrio fluvialis strain ATCC 33809 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 861144 28 100.0 32 ............................ CCAATAGGGGCTTTTATTTTACCTCGTCAAAT 861084 28 100.0 32 ............................ AAACGTGCTTCTGTGGAACTGGCTCAGATTAA 861024 28 100.0 32 ............................ ACTTTGTTTTTTCCACATATCCATGCGTAGCC 860964 28 100.0 32 ............................ GCCAGTACCGGACGAAGAAACAATCAATAACA 860904 28 100.0 32 ............................ TTGTATTCGCAAGCGTAGCGCGCCAGTGTTTG 860844 28 100.0 32 ............................ AAGACGAGGCGTTTCAACTGGTGGCACGACGT 860784 28 100.0 32 ............................ ATATTGATCGGGTTAACCACACATTTTACATC 860724 28 100.0 32 ............................ TATGAAGTCGAACGACGTGAACCGGATTACGA 860664 28 100.0 32 ............................ AGGCACACCGGAAGATATGGCTGGTGCGATCC 860604 28 100.0 32 ............................ TTTACGGTTCCGTCACGGTTCTGAATTACCAC 860544 28 100.0 32 ............................ TTCAATGTCTGCCGCAAAACCGATTTTCGCGA 860484 28 100.0 32 ............................ AGCCCAACATAACGGTTGCCAAGCGTATCGAT 860424 28 100.0 32 ............................ TGACCATTGAATTAAGTTCCGATCGTGTTTAA 860364 28 100.0 32 ............................ TTTTCGTCGCTGGCGACGGACTTGATTCGTTT 860304 28 100.0 32 ............................ CCGCAGGGATAAGGGAGCAAGCCTGCGACCGA 860244 28 100.0 32 ............................ GTGATGACCAAGCAGGAATAGCCCTTGCTCAT 860184 28 100.0 32 ............................ AAATACCTGCAGGACTACATCAAAACCCAATG 860124 28 96.4 32 ........................A... GCAATCAAAAGAAGTGGTGACGGTGATTGAAA 860064 28 100.0 32 ............................ TGCAGTATGTAATGTTGGGTCGGTTGACTCCG 860004 28 96.4 32 .............G.............. TAAACCTGTTTACCTGGTGTTAATGAGTGCCT 859944 28 100.0 32 ............................ ATTCTAAAGCGCACGACAAACGTTCTTAAATC 859884 28 89.3 13 .........................CTG TATATGAATTTCT Deletion [859844] 859843 28 92.9 32 ...T................G....... TTGACGAAGTACTTTACCCCAACTGCCCGCTA 859783 28 71.4 0 .C.......TAC.......AGG.....T | ========== ====== ====== ====== ============================ ================================ ================== 24 28 97.8 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAACGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTCTAGCGGATTTGCGACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAATAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGTACATCACAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGCCAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTATTTTTTACCCTTTATTTTTGCTATTTAAAAATATGCTTTAAATACAAATGGTTGCAAATGGTGGTTTTTAACAGGGCAAAAATGCATTTTTCATCCTAACTACTTGTTGCAGCATTCTTTTATAGAATTATTTTATT # Right flank : TAAAACGGGATTCATGGCAAACGGTCGTGGAAGTTGTATCTTACACAAAAACCTAACGACGTCGATATCAATAGGTTTTTATGTGTATTTATTGGTATATTTAGTGCGTTATTCTGAATTGGTTGCAAGAGACCAACATTAAATTTTTCATAATTGTTTATTGATTTGGTTAAATCATACGTTATTTTCGATAACAACAATGACATTTTAGGTTCGCAAGTATCCAATGATGTTTTATTTCCAGCATTACTATTTCTTACATTGCCACAAAGCATCCTTGTTCATATTACCCAACTAGTGACAGTGTCTCCGTCATTACTTGATACCCAATCTTCTCGCTAGGCGGTGTAGGTTTCCACTATCCAGTTCCAATTGTCGAGCCGTCGCTGCCCAGTTGCCTTGGTTATGATTGAGCGTTTGAACAATGATTTTTTTTTGATACCTATCCGTTGCTTCTTTAAGCCCCATACCTGATTCACTAATCGGCGAAATGTTGGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1327637-1327782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014034.2 Vibrio fluvialis strain ATCC 33809 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 1327637 27 100.0 33 ........................... TATGGCGAGCGACGGAAACCGTAAATGTGAAGT 1327697 27 100.0 33 ........................... TTTGCACGGGCGCAAGCCGTTCCGGACGTTCAA 1327757 26 88.9 0 ....................A.T-... | ========== ====== ====== ====== =========================== ================================= ================== 3 27 96.3 34 GTTCACCGCCGCATAGGCAGCTGATAA # Left flank : GCTGACATGACAGCGCTTGGATACTTCAACATATCGGAGTCAACAATGGTTCCTGAAGAATGCCATCTGGCTGTTTTTCGACGCAATCAAAAAATCGACCAAGCGACACCGAATGGGCAAAGAATCAGAGCCGAACGTTTGGCGAAACGCGCTAGAGATAGAGGCGATTCACCTACTCGATTTACCCCAGAAGACCTTTTGTTTGAACATTATCATTCTATACCGATAACCAGTACCCGTAGTGGTCAATCATTCAGGTTAAACTTGCAATATCAACAACTAGATACCGTGGCACATGGAAGATGGGCATTCTCAAGCTACGGGCTTGCAAATAAAGAACTTGAAAGTTGCCCTGTTCCCGTCATTTGACCAATTTAATATTCATGCCCTATAATTTCCTGATTTTTAAACAAAAAAATTAACCATTAAAATAAAAGGTATTATTTTTGCTTTACCGATTAATAGATTGATAAATATACACTATATTTAAATTGACCATT # Right flank : ACTCACAAATAGTCTTTTAAAGACTGTTTGCCTTGCTAATAATTGAGGATTGTAATCCTCAATACTACTGCAAAAGTAGTTGATAACAAACGTACCACTTTCATTCGAGCTCGTGATCAGGTACTACTGAATAAGTAGATATTGAAAAATTGGCCAGCACATTCAAATAGTTATCGACATTCCGTATTTTTAAGACGGAGAACCTCGAGTATCACTCCCAAGAATCATGGCTGCCGAACCTCTCACAGCTGTACTCGTTACGCCTACCCGCGACAACCGGGCCTTTTTATACTATTAATTGTCAATTAGAAGCGACTTTTCTTTAGTATGTCGGTGAATCATGTTGCCATATCGTGTGAATATACTTTGTACCCTGATAAGAGGTTTCAAACTCAATGTCCTGTATAGAGAAACTGTGGTCATCTAAAATTGCCCACGGTTTTAGAGTTTTCCCAATACAGCCTTTCAGATTTATTGAGTGCCAGCCCGCCGTTATATTG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCAGCTGATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //