Array 1 17328-19950 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBST01000004.1 Limosilactobacillus fermentum strain FAM 19471 scaffold_0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 17328 36 100.0 30 .................................... GCTAACCGCGGACGAAATTAAGCGGGTGTG 17394 36 100.0 31 .................................... AGTATCGTCTCCGAACAGTGCAAACGCCGCT 17461 36 100.0 30 .................................... TATTGGTTAGGGCCTGGCCGGTGTCTGCTG 17527 36 100.0 30 .................................... CCTGATGATCCACAATTACGTCACTGGTTA 17593 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 17659 36 100.0 42 .................................... ATCTTTAAATAACGGTCATCGCCCATATCAGTGCCCATATCA 17737 36 100.0 30 .................................... CAGTTTTACAATGACTACGGGATCCATTGG 17803 36 100.0 30 .................................... TCCCAGATTGATGAACCGAAAATCTTGTTA 17869 36 100.0 30 .................................... GCCCGGCCACTGTTTCATCGTACATAGCCA 17935 36 100.0 30 .................................... TCCGGCGCGTCAAAAACCGCTAAGCCCCCC 18001 36 100.0 30 .................................... TTGCATAGAAAGGAAGCATATTAAATGGCA 18067 36 100.0 30 .................................... GGGACACTAGTCATTTGCACGTGGGAGTTA 18133 36 100.0 30 .................................... CGCCGCTACCATGATGGGGATCAATATATC 18199 36 100.0 30 .................................... ACTTTTCTATTGATGAAGAAAAGTACTTAG 18265 36 100.0 30 .................................... CATTCTGGGCTAAGTTAGAAGCAAAGGTCC 18331 36 100.0 30 .................................... ATAACGATTTAATTGTTAACGGCAAGCATT 18397 36 100.0 30 .................................... GACGTAGACCTTCACTTAGACAATCTTTTT 18463 36 100.0 30 .................................... AAGCAGCCTATCAGAGTGGGGCGGAAAACC 18529 36 100.0 30 .................................... TCTCATGTACGAGACTAGATCAGGTCCGTC 18595 36 100.0 30 .................................... CAGTACTTGCGACCGGCGACCCTCTTTGGC 18661 36 100.0 30 .................................... CATTCGTAAGATTATGATGCGTCAACGGCA 18727 36 100.0 30 .................................... GTGGTTTCATTACCAGAGAACGTCGTCCCG 18793 36 100.0 30 .................................... TAAAGAAATCGAAAAGTTAGACTACGAGCA 18859 36 100.0 30 .................................... ATCGTTGACCATAAGGCGTTAATTGCTCCC 18925 36 100.0 30 .................................... AACAGCACGAACAGAAGTTCATCAATACCC 18991 36 100.0 30 .................................... TAAAGAGTTTGAAAAGGCAACTAACAAGTG 19057 36 100.0 30 .................................... GATCCACCGCCGTCAAGATACCATGCGTTC 19123 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 19189 36 100.0 30 .................................... TGCGAGGATAATGAATATCGTAATGTCCCA 19255 36 100.0 30 .................................... CAAGTAACTAGCAACTTATAAGTAGGGGAA 19321 36 100.0 30 .................................... TGTTACCGCTTGCGCTTCCTAGCCCGACAA 19387 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 19453 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 19519 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 19585 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 19651 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 19717 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 19783 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 19849 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 19915 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ========================================== ================== 40 36 99.6 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6274-8134 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBST01000041.1 Limosilactobacillus fermentum strain FAM 19471 scaffold_0041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6274 29 96.6 32 ............................C GTATTGCGCATTGAGTTTATCCTTATCATCTT 6335 29 100.0 33 ............................. CGATAAATAACCTACTGTGTCCCACCAGTTAAG 6397 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 6458 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 6519 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 6580 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 6641 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 6702 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 6764 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 6825 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 6886 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 6947 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 7008 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 7069 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 7130 29 100.0 32 ............................. ATCAGCATGGTCTAACGTTCCGTTCGGTTACA 7191 29 100.0 32 ............................. TCAAGTGCCAGACCCAATCACTGAAGTTCATG 7252 29 96.6 32 ............................C ATCGTCAACGGTAACTGTGACCTGGTTATCCA 7313 29 100.0 33 ............................. ATGGAGTGACAGATGTAAAGGAATTTGGTGAGG 7375 29 100.0 32 ............................. ACCCTTCTACCCCAATCATTAATACAACCTCA 7436 29 100.0 32 ............................. CAGCTTGATCCTATATTCCCCCTAGCGGTGCT 7497 29 96.6 32 ............................C AAGCATTAAGAATGCCCCTCAGAATTTATTCG 7558 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 7619 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 7680 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 7741 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 7802 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 7863 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 7924 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 7985 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 8045 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 8105 29 79.3 0 ...T.......TC.A........A....C | T [8108] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CTGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //