Array 1 307781-308968 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOH01000003.1 Escherichia coli strain LN_F20_1 NODE_3_length_399850_cov_49.459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 307781 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 307842 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 307903 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 307964 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 308025 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 308086 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 308147 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 308208 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 308269 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 308330 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 308391 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 308452 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 308513 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 308574 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 308635 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 308696 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 308757 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 308818 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 308879 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 308940 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334668-335671 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOH01000003.1 Escherichia coli strain LN_F20_1 NODE_3_length_399850_cov_49.459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334668 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 334729 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 334790 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 334851 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 334912 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 334973 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 335034 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 335095 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 335156 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 335217 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 335278 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 335339 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 335399 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 335460 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 335521 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 335582 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 335643 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //