Array 1 406-1696 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXA01000033.1 Neisseria meningitidis strain NM1471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... TTTTAACTTTGACCGTGTGCAATCCAGTTA 538 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 604 36 100.0 30 .................................... TCGTTGATGACGGATGTGTCGGGTTGCGGA 670 36 100.0 30 .................................... ATTATTCGTCGATGATGGAAACTCGAGCAT 736 36 100.0 30 .................................... AAAAACAACCATTTTGTTATTTCGATTTTT 802 36 100.0 30 .................................... TCAAATAGAAATACATACGCCGAGTAATTA 868 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 934 36 100.0 30 .................................... TCTATGCCTGTTATTGTTTTCAGCCTTTTG 1000 36 100.0 30 .................................... TTATAATAATAACCCAATACACGATGTTAA 1066 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1132 36 100.0 30 .................................... TTATGCCGCTTTATTTCTGCCATATCGACG 1198 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1264 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1330 36 100.0 30 .................................... TTATGCCGCTTTATTTCTGCCATATCGACG 1396 36 100.0 30 .................................... AAAAACAACCATTTTGTTATTTCGATTTTT 1462 36 100.0 30 .................................... TCGTTGATGACGGATGTGTCGGGTTGCGGA 1528 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 1594 36 100.0 31 .................................... TTACTGCCAATTATCATACATAAGATTTTGC 1661 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //