Array 1 76872-79695 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOSM01000016.1 Lujinxingia vulgaris strain TMQ4 T4_scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 76872 36 100.0 37 .................................... TGCGGCCTTACGCTCTTGGTACTCTGCATCGTTTCGG 76945 36 100.0 36 .................................... TTTCCTTTGAGGCAACTATTGCCTCGGTTATGCCCA 77017 36 100.0 38 .................................... GAGCTCCTTGAGTACCTTTCGCCCAGAGTTCTTCATAC 77091 36 100.0 38 .................................... ATGGAAAGGGCGATCTGATCAACGTTCGTGAAGTTAGC 77165 36 100.0 37 .................................... ATGAACCTCATATACATTTCCGCCGTCATGGTCGATC 77238 36 100.0 35 .................................... CGCCCTGGAGCTGGCCACCACTAAGGCCCCTCCAT 77309 36 100.0 37 .................................... AGGTCTACTTACTCCACGCAACATAGATAGTGCATCA 77382 36 100.0 38 .................................... TTGACTGCGACCAAGAAGCCCCCGCTTGCGCGGAGCGT 77456 36 97.2 35 ...................................T CGGCATTACTGGCCCAGCTGCGCCAATCGGCGCAG 77527 36 100.0 37 .................................... TCAGCGCTCCACACGGTGCCGATCGACAGTCCGGCCA 77600 36 100.0 38 .................................... CTGCATTCTTCTCGAATCAGCTTTGCTGATTCGAATAG 77674 36 100.0 37 .................................... CGCGGAGGGTGCTCGCGACGGCACCCAGCAGCGTAGC 77747 36 100.0 36 .................................... CGTTTTTCGTTGATGATGTTGAGTTCACTTTTGTAC 77819 36 100.0 36 .................................... ACGTCGCGCGGCACCCAGACAGTCACCTGGTCGATG 77891 36 100.0 38 .................................... AGTAGATAGCGTCGGGTGACGCGGCCCCACACGATATC 77965 36 100.0 36 .................................... GGCCTGTGCCCAATAATAGCCACCAGCAATAAGCTC 78037 36 100.0 38 .................................... TGGATAGCTGTTGCTGCATGGGGAATTTCAACCCCATC 78111 36 100.0 37 .................................... CCGTGAAATCACGGAGGATGCTCTGGAGTAGCATTTT 78184 36 100.0 38 .................................... TACTGCGTGCTGACCATCCTCCATAACAAGCGCAGCTG 78258 36 100.0 37 .................................... CCTTCCTGGTCAGCCCCGAAGCCAAAGTTGCGAAAGC 78331 36 100.0 38 .................................... GGGCACTGGCCCTGGTCGGTGATACCCTCGCACTGTAT 78405 36 97.2 37 ............A....................... TCCACAGCGCTGAGACTGGCTCGCACCAGGGCCGCAA 78478 36 100.0 38 .................................... AACGCTGGCGGCTTCGTCCTGTACCGTAAGGGGCGCAA 78552 36 100.0 38 .................................... AGCCCACGCGGGCAGGGTGATGGTGGTCACGGTGTCGG 78626 36 100.0 36 .................................... GTTCAAGTACATCACCTGGCCGGTGAGGTACTCCTT 78698 36 97.2 38 .............A...................... GGCGCGCTCTTCCTCTCGCGCCGCCGCCTCCTGCTCCT 78772 36 97.2 39 ............A....................... TGACAGGCCGAGGTCGCTGCGGATCTCGCGCAGGCGCTC 78847 36 100.0 38 .................................... TCAAGGTTGGCAGCTTTGGCGGCGACTACCTCGAGCTC 78921 36 100.0 37 .................................... GCCTCGAGAGCGGTGATGTCCTCCCGATGGTTCTGTA 78994 36 100.0 37 .................................... CCTTCAGACGCCGGTACCTATCGCACGTCGAGCTCGC 79067 36 100.0 39 .................................... GACCGTTGAACGCTGGATTATGAATCCCCGTGGCGACGA 79142 36 100.0 38 .................................... CCCTCGTACTCGCTGGAGTCCGCGAAGAAGTTGCGGCA 79216 36 100.0 38 .................................... CCCTTGAGCACGGATCGGACGATGCTGCGGCTCACGCC 79290 36 100.0 38 .................................... CCCTCGTACTCGCTGGAGTCCGCGAAGAAGTTGCGGCA 79364 36 100.0 38 .................................... GCGATCCATTTACCGATACTTTCATCTTCGCGCCTAAA 79438 36 100.0 38 .................................... CTATAAGCTGCATAACAGGCGAGATAGATTGCGACGAG 79512 36 100.0 39 .................................... TTCGATTTGGCACTCATTGCCTGAACACATTAACATGCA 79587 36 100.0 37 .................................... ATGCGGGCTTCGTACTTTTCCGTGGCTTTCGACATTT 79660 36 94.4 0 .................................C.T | ========== ====== ====== ====== ==================================== ======================================= ================== 39 36 99.6 37 CCTTCCGCCTCCTTCGGGAGGCGGCCCCGTTGAAGC # Left flank : AAGGTAGCCGAAGATGGTCGGGACCACCCGAAGGGGCCTCTGGGAGGTGATGGTGTAGGTCAGGATGACCATCGCGGACCTGGGATAGGTGGGCGATAATGGTCGAACACTCATCATAAAACCTCCAGGTGTGGACGGTCGTAACGCGGGCATCTTTTGAGCGTGTGGAACGAGGCGCGTCGACTGAAATCGAGCAACCTGGGATTGCATCACGTGATTCAATCTGGACGATTGGTCTGCGATCTGGCATCTCACACAGGTCGGATTTCGGCGGTGCGTTGTCGTGAAATGGGTCGGAAGCGTCGGCGAGCATTGAGGTGATGAGAAAAACCCCGGGAATGCTCGTTTTTCGGGGGTAAGTGTTTGTTTTTTCGGCGTCTTTTGCTACACTGAGAGGCATGGAAACACTCCCTCCCCATAGCACGAACCCCCTGGATTTGAGCGATGCTCGCAAACGCATCTGTCTCGTCCAGTCCTGGCGCGGTGATCGGATAGGCGCC # Right flank : TCAGCCCGGCAGATGTGGCGCGACGAGTTGCGGCGTGCGTGCTTTTCCCTTCTTCGATGACACACGCCTCCTCGCGCGCAAGCGCACCATCTGGCTCGCTGGACACCGTGATCAAAAAAGCCCCGGATGCTCACTGGAGCGTCCGGGGCTTTTTCGTTGATTCGCTTAATCGGCTTTTTGTTTTTTTGGAGGCATTTGAAGCGAAAAGGTGAGTTCCAGGTTGGAGGGAAACTCGTTGGGAAGCTGCTTGCTCTGGACCTTGCCCTTAAAGGCGACCTGGACGAAGTCAGGGAGGATGGTGTCTTCGAAGTAGGTGCGCATCTGGCTAAATTGCGCACGGGAGACGGGGGTGGTGCCGTGGGCGAGCATGGAGTCGTTGCGGATCTCGCTGAGGGTGAGGCGAGAGGTTTTGGTGGCGCGGGCCAGGGGGGCCAGGGGGCCGTCGAGGCGCTCGATGAGGAGCCAGGCCTGGTAGCTCCCCATCACGTAGAGTCCTTTGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCCTCCTTCGGGAGGCGGCCCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //