Array 1 151517-152459 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFJ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033928 CFSAN033928_contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151517 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 151578 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 151639 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 151700 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 151761 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 151822 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 151883 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 151944 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 152005 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 152066 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 152127 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 152188 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 152249 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 152310 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 152371 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 152432 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168591-170433 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFJ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033928 CFSAN033928_contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 168591 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 168652 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 168713 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 168774 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 168835 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 168896 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 168957 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 169019 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 169080 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 169141 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 169202 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 169263 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 169324 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 169385 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 169446 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 169507 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 169568 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 169629 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 169690 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 169752 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 169855 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 169916 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 169977 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 170038 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 170099 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 170160 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 170221 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 170282 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 170343 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 170404 29 96.6 0 A............................ | A [170430] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //